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L3_122_000M1_scaffold_614

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_614_1
Campylobacter coli, Campylobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..384
DNA (384bp) protein (128aa)
Uncharacterized protein n=4 Tax=Campylobacter RepID=E6S1A3_CAMJC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK24498.1}; TaxID=195 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.;" source="Campylobacter coli.;"
L3_122_000M1_scaffold_614_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(613..2829)
DNA (2217bp) protein (739aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAL7_9FIRM
CRISPR-associated helicase Cas3 {ECO:0000313|EMBL:CCO05989.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
cas3; CRISPR-associated helicase Cas3
L3_122_000M1_scaffold_614_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3093..4340
DNA (1248bp) protein (416aa)
Bacterial capsule synthesis protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZS1_9FIRM
Bacterial capsule synthesis protein {ECO:0000313|EMBL:CDC66698.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
capA; Capsule biosynthesis protein CapA
L3_122_000M1_scaffold_614_4
unknown

Not on your lists

4524..4691
DNA (168bp) protein (56aa)

This feature has no annotations

L3_122_000M1_scaffold_614_5
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4688..7030
DNA (2343bp) protein (781aa)
Glycoside Hydrolase Family 31 protein (EC:3.2.1.-)
Glycosyl hydrolase family 31 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7B3_9FIRM
Glycosyl hydrolase family 31 {ECO:0000313|EMBL:CDC66697.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_614_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7189..7593
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFM5_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05986.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_614_7
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7583..8464
DNA (882bp) protein (294aa)
Putative membrane protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3C1_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDC66695.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_614_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8534..9604)
DNA (1071bp) protein (357aa)
Twitching motility protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAI5_9FIRM
pilT; Twitching motility protein
Twitching motility protein {ECO:0000313|EMBL:CCO05984.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_614_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9632..11311)
DNA (1680bp) protein (560aa)
Putative general secretion pathway protein E n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZR7_9FIRM
Putative general secretion pathway protein E {ECO:0000313|EMBL:CDC66693.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
pilB; Type II/IV secretion system protein, ATPase
L3_122_000M1_scaffold_614_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11471..12295
DNA (825bp) protein (275aa)
pilD; pre-pilin peptidase (EC:3.4.23.43)
Bacterial peptidase A24 N-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7A8_9FIRM
Bacterial peptidase A24 N-terminal domain protein {ECO:0000313|EMBL:CDC66692.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_614_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12422..14290)
DNA (1869bp) protein (623aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66691.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
pilin related protein
L3_122_000M1_scaffold_614_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14309..15118)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3B6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66690.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
pilin related protein
L3_122_000M1_scaffold_614_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15136..17331)
DNA (2196bp) protein (732aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAI0_9FIRM
Putative secreted protein {ECO:0000313|EMBL:CCO05979.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
putative secreted protein
L3_122_000M1_scaffold_614_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17479..18189)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66688.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative secreted protein
L3_122_000M1_scaffold_614_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18192..19676)
DNA (1485bp) protein (495aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7A3_9FIRM
pilM; type IV pilus assembly protein PilM
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:CCO05977.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_614_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19779..20975)
DNA (1197bp) protein (399aa)
Type II secretion system protein F domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFL9_9FIRM
pilC; putative type IV pilus assembly protein PilC
Putative type IV pilus assembly protein PilC {ECO:0000313|EMBL:CCO05976.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_614_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21264..21830)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3B2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66685.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_122_000M1_scaffold_614_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21919..23955)
DNA (2037bp) protein (679aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CCO05974.1}; EC=3.6.1.- {ECO:0000313|EMBL:CCO05974.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATP-dependent DNA helicase RecG n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAH5_9FIRM
L3_122_000M1_scaffold_614_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24138..25766)
DNA (1629bp) protein (543aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Z1_9FIRM
L3_122_000M1_scaffold_614_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26131..27513
DNA (1383bp) protein (461aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA34_9FIRM
cell envelope-related transcriptional regulator
Cell envelope-related transcriptional regulator {ECO:0000313|EMBL:CCO05972.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_614_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27677..28006
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZG3_9FIRM
csoR; Possible Copper-sensing transcriptional repressor CsoR
Possible Copper-sensing transcriptional repressor CsoR {ECO:0000313|EMBL:CCO05971.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_614_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28021..30543
DNA (2523bp) protein (841aa)
copA; Cu2+-exporting ATPase (EC:3.6.3.4)
Cu2+-exporting ATPase {ECO:0000313|EMBL:CCO05970.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CCO05970.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Copper-exporting ATPase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6Z1_9FIRM
L3_122_000M1_scaffold_614_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30997..31434)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66256.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_122_000M1_scaffold_614_24
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31434..31880)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JX10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS38496.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein predicted by Glimmer/Critica
L3_122_000M1_scaffold_614_25
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31914..32333)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NR44_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC13685.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
L3_122_000M1_scaffold_614_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32343..32594)
DNA (252bp) protein (84aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KD34_9FIRM
CRISPR-associated protein, Cas1 family
L3_122_000M1_scaffold_614_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32594..33217)
DNA (624bp) protein (208aa)
CRISPR system CASCADE complex protein CasE n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWI7_9FIRM
CRISPR system CASCADE complex protein CasE {ECO:0000313|EMBL:ERJ96450.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cse3 family
L3_122_000M1_scaffold_614_28
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33226..33978)
DNA (753bp) protein (251aa)
CRISPR system CASCADE complex protein CasD n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3X4_9FIRM
CRISPR system CASCADE complex protein CasD {ECO:0000313|EMBL:ERJ96449.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cas5e family
L3_122_000M1_scaffold_614_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33984..34142)
DNA (159bp) protein (53aa)
CRISPR system CASCADE complex protein CasB n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KVY0_9FIRM
CRISPR system CASCADE complex protein CasB {ECO:0000313|EMBL:ERJ96447.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cse2 family
L3_122_000M1_scaffold_614_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34167..35753)
DNA (1587bp) protein (529aa)
CRISPR system CASCADE complex protein CasA n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KD29_9FIRM
CRISPR system CASCADE complex protein CasA {ECO:0000313|EMBL:ERJ96446.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cse1 family
Displaying items 1-30 of 48 in total

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