ggKbase home page

L3_122_031G1_scaffold_61

Search features with annotation key words

Displaying items 1-30 of 101 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_031G1_scaffold_61_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(280..1815)
DNA (1536bp) protein (512aa)
Dihydropyrimidine dehydrogenase subunit A {ECO:0000313|EMBL:AIW43728.1}; EC=1.4.1.13 {ECO:0000313|EMBL:AIW43728.1};; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
gltD; dihydropyrimidine dehydrogenase subunit A (EC:1.4.1.13)
Glutamate synthase [NADPH] small subunit n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G617_BIFLO
L3_122_031G1_scaffold_61_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1817..6388)
DNA (4572bp) protein (1524aa)
Glutamate synthase [NADPH] large subunit NADPH-gogat n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G616_BIFLO
gltB; glutamate synthase [NADPH] large subunit; NADPH-gogat
Glutamate synthase {ECO:0000313|EMBL:AIW43727.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_122_031G1_scaffold_61_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6732..7016
DNA (285bp) protein (95aa)
Transcriptional regulator n=4 Tax=Bifidobacterium RepID=V6XYA6_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK70581.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_122_031G1_scaffold_61_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7069..8094)
DNA (1026bp) protein (342aa)
Uncharacterized conserved protein related to dihydrodipicolinate reductase n=2 Tax=Bifidobacterium longum RepID=D6D8S9_BIFLN
Uncharacterized conserved protein related to dihydrodipicolinate reductase
Dihydrodipicolinate reductase {ECO:0000313|EMBL:KEY22151.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_122_031G1_scaffold_61_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8553..8879
DNA (327bp) protein (109aa)
Uncharacterized protein n=13 Tax=Bifidobacterium RepID=Q8G613_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW44675.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_122_031G1_scaffold_61_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8936..9124)
DNA (189bp) protein (63aa)
Uncharacterized protein n=10 Tax=Bifidobacterium RepID=C5EAS7_BIFLI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK70585.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_122_031G1_scaffold_61_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9387..10433)
DNA (1047bp) protein (349aa)
LacI-type response repressor n=11 Tax=Bifidobacterium RepID=E4R409_BIFLM
transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:KEY22149.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_122_031G1_scaffold_61_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11020..11973
DNA (954bp) protein (318aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=V6XYA0_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:EEQ55119.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L3_122_031G1_scaffold_61_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12274..12402
DNA (129bp) protein (43aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=C5EAS4_BIFLI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW43722.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_122_031G1_scaffold_61_10
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12494..12646
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DSA3_BIFLD
Uncharacterized protein {ECO:0000313|EMBL:EFV36531.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
hypothetical protein
L3_122_031G1_scaffold_61_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13013..14377
DNA (1365bp) protein (455aa)
MATE efflux family protein n=9 Tax=Bifidobacterium RepID=C5EAS2_BIFLI
putative efflux protein, MATE family
Multidrug transporter MatE {ECO:0000313|EMBL:AIW43720.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_122_031G1_scaffold_61_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14755..15834)
DNA (1080bp) protein (360aa)
Glycerate kinase n=5 Tax=Bifidobacterium longum RepID=Q8G606_BIFLO
glxK; glycerate kinase
Glycerate kinase {ECO:0000313|EMBL:BAP83485.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L3_122_031G1_scaffold_61_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16114..17172
DNA (1059bp) protein (353aa)
Transcriptional regulator n=2 Tax=Bifidobacterium longum RepID=F8AQQ0_BIFLN
transcriptional regulator
Sugar-binding domain protein {ECO:0000313|EMBL:EEQ55113.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L3_122_031G1_scaffold_61_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17252..18661)
DNA (1410bp) protein (470aa)
Putative coproporphyrinogen III oxidase n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MTE4_BIFL1
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:KEY32865.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
coproporphyrinogen III oxidase
L3_122_031G1_scaffold_61_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18661..20541)
DNA (1881bp) protein (627aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Elongation factor 4 n=9 Tax=Bifidobacterium RepID=LEPA_BIFLD
lepA; lepa
L3_122_031G1_scaffold_61_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


20688..20948
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=17 Tax=Bifidobacterium RepID=RS20_BIFLD
rpsT; rpst
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_122_031G1_scaffold_61_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21200..21988)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EAR5_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:EEQ55109.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L3_122_031G1_scaffold_61_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22236..23135)
DNA (900bp) protein (300aa)
Pyrophosphatase n=9 Tax=Bifidobacterium RepID=F8AQQ5_BIFLN
pyrophosphatase
MazG family protein {ECO:0000313|EMBL:EEQ55108.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L3_122_031G1_scaffold_61_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23332..24459)
DNA (1128bp) protein (376aa)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KEY22139.1}; EC=2.6.1.42 {ECO:0000313|EMBL:KEY22139.1};; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase n=12 Tax=Bifidobacterium RepID=B3DSB3_BIFLD
L3_122_031G1_scaffold_61_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(24683..25303)
DNA (621bp) protein (207aa)
50S ribosomal protein L25 n=17 Tax=Bifidobacterium RepID=RL25_BIFLD
50S ribosomal protein L25
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_122_031G1_scaffold_61_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25732..26769
DNA (1038bp) protein (346aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=C5EAR1_BIFLI
hypothetical protein
Alpha/beta hydrolase {ECO:0000313|EMBL:KEY22137.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_122_031G1_scaffold_61_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26905..28329)
DNA (1425bp) protein (475aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
NAD(P) transhydrogenase subunit beta n=12 Tax=Bifidobacterium RepID=B3DSB6_BIFLD
pntB; pntb
L3_122_031G1_scaffold_61_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28329..28634)
DNA (306bp) protein (102aa)
NAD(P) transhydrogenase alpha-2 subunit n=15 Tax=Bifidobacterium RepID=B7GS77_BIFLS
NAD(P) transhydrogenase alpha-2 subunit
NAD(P) transhydrogenase alpha-2 subunit {ECO:0000313|EMBL:BAP83473.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L3_122_031G1_scaffold_61_24
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28650..29813)
DNA (1164bp) protein (388aa)
NAD/NADP transhydrogenase alpha subunit n=13 Tax=Bifidobacterium RepID=D6D8U6_BIFLN
NAD(P) transhydrogenase alpha-1 subunit
NAD(P) transhydrogenase subunit alpha part 1 {ECO:0000313|EMBL:CCY95948.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_122_031G1_scaffold_61_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30232..32265
DNA (2034bp) protein (678aa)
AMP-dependent synthetase and ligase n=3 Tax=Bifidobacterium longum RepID=F8AQR2_BIFLN
AMP-dependent synthetase and ligase
AMP-binding enzyme {ECO:0000313|EMBL:EEQ55102.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L3_122_031G1_scaffold_61_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32318..33382)
DNA (1065bp) protein (355aa)
GTPase Era n=5 Tax=Bifidobacterium longum RepID=D6ZU01_BIFLJ
era; GTP-binding protein Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_122_031G1_scaffold_61_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33384..34817)
DNA (1434bp) protein (478aa)
Hemolysin-like protein n=13 Tax=Bifidobacterium longum RepID=B3DSC1_BIFLD
hypothetical protein
Membrane protein {ECO:0000313|EMBL:AIW43705.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_122_031G1_scaffold_61_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34893..35441)
DNA (549bp) protein (183aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Endoribonuclease YbeY n=17 Tax=Bifidobacterium RepID=YBEY_BIFLD
hypothetical protein
L3_122_031G1_scaffold_61_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35431..36552)
DNA (1122bp) protein (374aa)
Phosphate starvation-inducible protein n=15 Tax=Bifidobacterium RepID=B3DSC3_BIFLD
phosphate starvation-inducible protein
PhoH family protein {ECO:0000313|EMBL:EIJ24478.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_122_031G1_scaffold_61_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36625..36963)
DNA (339bp) protein (113aa)
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases n=10 Tax=Bifidobacterium RepID=D6D8V0_BIFLN
hit2; hit2
Histidine triad (HIT) protein {ECO:0000313|EMBL:ADH00353.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
Displaying items 1-30 of 101 in total

View Taxonomy