ggKbase home page

L3_122_031G1_scaffold_433

Search features with annotation key words

Displaying items 1-30 of 90 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_031G1_scaffold_433_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..112
DNA (111bp) protein (37aa)
Elongation factor Tu n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TX06_9CLOT
tuf; elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
L3_122_031G1_scaffold_433_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


774..1082
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=11 Tax=Clostridium RepID=RS10_CLOB8
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
L3_122_031G1_scaffold_433_3
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1156..1785
DNA (630bp) protein (210aa)
50S ribosomal protein L3 n=2 Tax=Clostridium butyricum RepID=M8J644_CLOBU
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rplC; 50S ribosomal protein L3
L3_122_031G1_scaffold_433_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1811..2431
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=4 Tax=Clostridium butyricum RepID=B1QYH0_CLOBU
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
rplD; 50S ribosomal protein L4
L3_122_031G1_scaffold_433_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2431..2727
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=4 Tax=Clostridium butyricum RepID=B1QYG9_CLOBU
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rplW; 50S ribosomal protein L23
L3_122_031G1_scaffold_433_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2792..3622
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=4 Tax=Clostridium butyricum RepID=B1QYG8_CLOBU
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
rplB; 50S ribosomal protein L2
L3_122_031G1_scaffold_433_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3685..3957
DNA (273bp) protein (91aa)
30S ribosomal protein S19 n=4 Tax=Clostridium butyricum RepID=B1QYG7_CLOBU
30S ribosomal protein S19 {ECO:0000313|EMBL:KHD14883.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
rpsS; 30S ribosomal protein S19
L3_122_031G1_scaffold_433_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3979..4314
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=4 Tax=Clostridium butyricum RepID=B1QYG6_CLOBU
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rplV; 50S ribosomal protein L22
L3_122_031G1_scaffold_433_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4338..5006
DNA (669bp) protein (223aa)
30S ribosomal protein S3 n=4 Tax=Clostridium butyricum RepID=B1QYG5_CLOBU
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
rpsC; 30S ribosomal protein S3
L3_122_031G1_scaffold_433_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5024..5458
DNA (435bp) protein (145aa)
50S ribosomal protein L16 n=4 Tax=Clostridium butyricum RepID=B1QYG4_CLOBU
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rplP; 50S ribosomal protein L16
L3_122_031G1_scaffold_433_11
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5458..5670
DNA (213bp) protein (71aa)
50S ribosomal protein L29 n=4 Tax=Clostridium butyricum RepID=B1QYG3_CLOBU
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
50S ribosomal protein L29
L3_122_031G1_scaffold_433_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5694..5948
DNA (255bp) protein (85aa)
30S ribosomal protein S17 n=4 Tax=Clostridium butyricum RepID=B1QYG2_CLOBU
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
L3_122_031G1_scaffold_433_13
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5976..6344
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=5 Tax=Clostridium RepID=U5MKC8_CLOSA
hypothetical protein
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
L3_122_031G1_scaffold_433_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6360..6674
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=4 Tax=Clostridium butyricum RepID=B1QYG0_CLOBU
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
rplX; 50S ribosomal protein L24
L3_122_031G1_scaffold_433_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6697..7236
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=4 Tax=Clostridium butyricum RepID=B1QYF9_CLOBU
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rplE; 50S ribosomal protein L5
L3_122_031G1_scaffold_433_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7253..7438
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=5 Tax=Clostridium RepID=U5MP94_CLOSA
rpsZ; 30S ribosomal protein S14 type Z
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
L3_122_031G1_scaffold_433_17
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7471..7869
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=3 Tax=Clostridium butyricum RepID=B1QYF7_CLOBU
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rpsH; 30S ribosomal protein S8
L3_122_031G1_scaffold_433_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7940..8482
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=4 Tax=Clostridium butyricum RepID=B1QYF6_CLOBU
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
rplF; 50S ribosomal protein L6
L3_122_031G1_scaffold_433_19
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8502..8861
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=4 Tax=Clostridium butyricum RepID=B1QYF5_CLOBU
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rplR; 50S ribosomal protein L18
L3_122_031G1_scaffold_433_20
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8881..9378
DNA (498bp) protein (166aa)
30S ribosomal protein S5 n=4 Tax=Clostridium butyricum RepID=B1QYF4_CLOBU
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rpsE; 30S ribosomal protein S5
L3_122_031G1_scaffold_433_21
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9392..9571
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=4 Tax=Clostridium butyricum RepID=B1QYF3_CLOBU
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rpmD; 50S ribosomal protein L30
L3_122_031G1_scaffold_433_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9593..10033
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=4 Tax=Clostridium butyricum RepID=B1QYF2_CLOBU
50S ribosomal protein L15 {ECO:0000313|EMBL:KHD14868.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
rplO; 50S ribosomal protein L15
L3_122_031G1_scaffold_433_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10035..11321
DNA (1287bp) protein (429aa)
Protein translocase subunit SecY n=2 Tax=Clostridium butyricum RepID=B1QYF1_CLOBU
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
secY; protein translocase subunit SecY
L3_122_031G1_scaffold_433_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11347..11994
DNA (648bp) protein (216aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
adk; adenylate kinase Adk (EC:2.7.4.3)
Adenylate kinase n=4 Tax=Clostridium butyricum RepID=B1QYF0_CLOBU
L3_122_031G1_scaffold_433_25
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11994..12743
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
map1; methionine aminopeptidase Map (EC:3.4.11.18)
Methionine aminopeptidase n=3 Tax=Clostridium butyricum RepID=B1QYE9_CLOBU
L3_122_031G1_scaffold_433_26
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13120..13338
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=14 Tax=Clostridium RepID=IF1_CLOB8
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
L3_122_031G1_scaffold_433_27
Bacillus sp. BH072, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13393..13506
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=87 Tax=Firmicutes RepID=RL36_BACA2
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1570330 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. BH072.;"
L3_122_031G1_scaffold_433_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13678..14046
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=4 Tax=Clostridium butyricum RepID=B1QYE5_CLOBU
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rpsM; 30S ribosomal protein S13
L3_122_031G1_scaffold_433_29
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14062..14457
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=5 Tax=Clostridium RepID=U5MNL6_CLOSA
rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
L3_122_031G1_scaffold_433_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14485..15105
DNA (621bp) protein (207aa)
30S ribosomal protein S4 n=4 Tax=Clostridium butyricum RepID=B1QYE3_CLOBU
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rpsD; 30S ribosomal protein S4
Displaying items 1-30 of 90 in total

View Taxonomy