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L3_122_031G1_scaffold_467

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_031G1_scaffold_467_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..145
DNA (144bp) protein (48aa)
Murein-lipoprotein n=3 Tax=Escherichia coli RepID=I2Y6S3_ECOLX
lpp; murein lipoprotein
Major outer membrane lipoprotein Lpp {ECO:0000313|EMBL:EHU23335.1}; TaxID=868136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1D.;"
L3_122_031G1_scaffold_467_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(209..1213)
DNA (1005bp) protein (335aa)
Probable L,D-transpeptidase YnhG n=141 Tax=Escherichia RepID=YNHG_ECOLI
ErfK/YbiS/YcfS/YnhG family protein
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:EFK24820.1}; TaxID=749547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 187-1.;"
L3_122_031G1_scaffold_467_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1362..1778)
DNA (417bp) protein (139aa)
Cysteine desulfuration protein SufE n=364 Tax=Escherichia RepID=SUFE_ECO55
cysteine desulfuration protein
Cysteine desulfuration protein SufE {ECO:0000256|HAMAP-Rule:MF_01832, ECO:0000256|SAAS:SAAS00009949}; TaxID=749547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 187-1.;"
L3_122_031G1_scaffold_467_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1791..3011)
DNA (1221bp) protein (407aa)
sufS; L-selenocysteine lyase (and L-cysteine desulfurase) monomer, subunit of selenocysteine lyase (EC:4.4.1.16)
Cysteine desulfurase {ECO:0000256|HAMAP-Rule:MF_01831, ECO:0000256|RuleBase:RU004506}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_01831, ECO:0000256|RuleBase:RU004506};; Selenocysteine beta-lyase {ECO:0000256|HAMAP-Rule:MF_01831}; Selenocysteine lyase {ECO:0000256|HAMAP-Rule:MF_01831}; Selenocysteine reductase {ECO:0000256|HAMAP-Rule:MF_01831}; TaxID=749547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 187-1.;"
Cysteine desulfurase n=26 Tax=Escherichia coli RepID=SUFS_ECOHS
L3_122_031G1_scaffold_467_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3008..4279)
DNA (1272bp) protein (424aa)
Component of SufBCD complex n=9 Tax=Escherichia coli RepID=C6ECS4_ECOBD
cysteine desulfurase activator complex subunit SufD
FeS assembly protein SufD {ECO:0000313|EMBL:EGB69112.1}; TaxID=656429 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli TA007.;"
L3_122_031G1_scaffold_467_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4254..5000)
DNA (747bp) protein (249aa)
Component of SufBCD complex, ATP-binding component of ABC superfamily n=125 Tax=Escherichia coli RepID=B7N518_ECOLU
sufC; cysteine desulfurase
FeS assembly ATPase SufC {ECO:0000313|EMBL:ESK35937.1}; TaxID=1281241 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3323-1.;"
L3_122_031G1_scaffold_467_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5010..6497)
DNA (1488bp) protein (496aa)
FeS cluster assembly protein SufB n=414 Tax=Enterobacteriaceae RepID=SUFB_ECOLI
sufB; feS assembly protein SufB
FeS assembly protein SufB {ECO:0000313|EMBL:EIG94931.1}; TaxID=869670 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 97.0246.;"
L3_122_031G1_scaffold_467_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6506..6874)
DNA (369bp) protein (123aa)
Protein SufA n=592 Tax=Enterobacteriaceae RepID=SUFA_ECOLI
sufA; iron-sulfur cluster assembly scaffold protein
FeS assembly scaffold SufA {ECO:0000313|EMBL:EMX19524.1}; TaxID=1116066 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.1.;"
L3_122_031G1_scaffold_467_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7422..7610)
DNA (189bp) protein (63aa)
Uncharacterized protein n=27 Tax=Escherichia coli RepID=D7XNJ2_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:END91983.1}; TaxID=1125642 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.13.;"
L3_122_031G1_scaffold_467_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7710..8120)
DNA (411bp) protein (137aa)
1,4-dihydroxy-2-naphthoyl-CoA hydrolase {ECO:0000256|HAMAP-Rule:MF_01936}; Short=DHNA-CoA hydrolase {ECO:0000256|HAMAP-Rule:MF_01936};; EC=3.1.2.28 {ECO:0000256|HAMAP-Rule:MF_01936};; DHNA-CoA thioesterase {ECO:0000256|HAMAP-Rule:MF_01936}; TaxID=749532 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 78-1.;"
Esterase YdiI n=458 Tax=Enterobacteriaceae RepID=YDII_ECOLI
ydiI; hypothetical protein
L3_122_031G1_scaffold_467_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8117..11173)
DNA (3057bp) protein (1019aa)
Oxidoreductase, FAD-binding n=17 Tax=Escherichia coli RepID=A8A0N3_ECOHS
4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KEN48707.1}; TaxID=1444091 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 6-537-08_S1_C2.;"
FAD linked oxidase
L3_122_031G1_scaffold_467_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11562..12674
DNA (1113bp) protein (371aa)
UPF0118 inner membrane protein YdiK n=662 Tax=Enterobacteriaceae RepID=YDIK_ECOLI
ydiK; inner membrane protein YdiK
Uncharacterized protein {ECO:0000313|EMBL:EMV60770.1}; TaxID=1116032 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2871950.;"
L3_122_031G1_scaffold_467_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13103..13459
DNA (357bp) protein (119aa)
Uncharacterized protein ydiL n=115 Tax=Enterobacteriaceae RepID=E2QMQ0_ECOLX
ydiL; hypothetical protein
Putative cytoplasmic protein {ECO:0000313|EMBL:EHU23347.1}; TaxID=868136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1D.;"
L3_122_031G1_scaffold_467_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13619..14773
DNA (1155bp) protein (385aa)
Major facilitator family transporter n=6 Tax=Escherichia coli RepID=B3XG61_ECOLX
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFK24808.1}; TaxID=749547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 187-1.;"
major facilitator transporter
L3_122_031G1_scaffold_467_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15000..16265
DNA (1266bp) protein (422aa)
Transporter, major facilitator family n=17 Tax=Enterobacteriaceae RepID=A8A0N7_ECOHS
major facilitator transporter
Inner membrane transport protein ydiN {ECO:0000313|EMBL:EMW20994.1}; TaxID=1116125 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2845650.;"
L3_122_031G1_scaffold_467_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16277..17143
DNA (867bp) protein (289aa)
quinate/shikimate dehydrogenase (EC:1.1.1.282)
Quinate/shikimate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01578}; EC=1.1.1.282 {ECO:0000256|HAMAP-Rule:MF_01578};; NAD-dependent shikimate 5-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01578}; TaxID=1444153 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-222-05_S3_C2.;"
Quinate/shikimate dehydrogenase n=396 Tax=Enterobacteriaceae RepID=YDIB_ECO81
L3_122_031G1_scaffold_467_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17174..17932
DNA (759bp) protein (253aa)
aroD; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718};; 3-dehydroquinate dehydratase; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
3-dehydroquinate dehydratase n=37 Tax=Enterobacteriaceae RepID=AROD_ECOHS
L3_122_031G1_scaffold_467_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18077..19672
DNA (1596bp) protein (532aa)
Acetate CoA-transferase YdiF {ECO:0000256|PIRNR:PIRNR000858}; EC=2.8.3.8 {ECO:0000256|PIRNR:PIRNR000858};; TaxID=1116036 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2875150.;"
Acetate CoA-transferase YdiF n=17 Tax=Escherichia coli RepID=B1IQ62_ECOLC
coenzyme A transferase
L3_122_031G1_scaffold_467_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19686..20837
DNA (1152bp) protein (384aa)
ydiO; acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase domain protein n=8 Tax=Escherichia coli RepID=C6ECR2_ECOBD
Acyl-CoA dehydrogenase, C-terminal domain protein {ECO:0000313|EMBL:EFK24803.1}; TaxID=749547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 187-1.;"
L3_122_031G1_scaffold_467_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20880..21791)
DNA (912bp) protein (304aa)
Predicted DNA-binding transcriptional regulator n=3 Tax=Escherichia coli RepID=C6ECR1_ECOBD
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACT28995.1}; TaxID=469008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain B / BL21-DE3).;"
L3_122_031G1_scaffold_467_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21894..22070)
DNA (177bp) protein (59aa)
Uncharacterized protein n=966 Tax=Enterobacteriaceae RepID=A7ZMG2_ECO24
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZK23065.1}; TaxID=1444065 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-011-08_S1_C2.;"
L3_122_031G1_scaffold_467_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22107..22871
DNA (765bp) protein (255aa)
Electron transfer flavoprotein alpha/beta-subunit n=9 Tax=Escherichia coli RepID=C6ECR0_ECOBD
electron transfer flavoprotein YdiQ
Electron transfer flavoprotein domain-containing protein {ECO:0000313|EMBL:EGB69095.1}; TaxID=656429 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli TA007.;"
L3_122_031G1_scaffold_467_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22891..23829
DNA (939bp) protein (313aa)
Electron transfer flavoprotein alpha subunit n=234 Tax=Enterobacteriaceae RepID=C6ECQ9_ECOBD
electron transfer flavoprotein subunit YdiR
Electron transfer flavoprotein FAD-binding domain protein {ECO:0000313|EMBL:ESD25320.1}; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
L3_122_031G1_scaffold_467_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23885..25174
DNA (1290bp) protein (430aa)
Electron-transferring-flavoprotein dehydrogenase {ECO:0000313|EMBL:ACT28992.1}; EC=1.5.5.1 {ECO:0000313|EMBL:ACT28992.1};; TaxID=469008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain B / BL21-DE3).;"
Electron-transferring-flavoprotein dehydrogenase n=11 Tax=Escherichia coli RepID=C6ECQ8_ECOBD
hypothetical protein
L3_122_031G1_scaffold_467_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25171..25464
DNA (294bp) protein (98aa)
Iron-sulfur cluster-binding protein n=28 Tax=Escherichia coli RepID=C6ECQ7_ECOBD
iron-sulfur cluster-binding protein
Iron-sulfur cluster-binding protein {ECO:0000313|EMBL:ACT28991.1}; TaxID=469008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain B / BL21-DE3).;"
L3_122_031G1_scaffold_467_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25521..27167
DNA (1647bp) protein (549aa)
Short-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:ENB13382.1}; EC=6.2.1.- {ECO:0000313|EMBL:ENB13382.1};; TaxID=1116036 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2875150.;"
AMP-dependent synthetase and ligase n=28 Tax=Escherichia coli RepID=C6ECQ6_ECOBD
short chain acyl-CoA synthetase
L3_122_031G1_scaffold_467_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27224..29602)
DNA (2379bp) protein (793aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=749547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 187-1.;"
pps; phosphoenolpyruvate synthetase (EC:2.7.9.2)
Phosphoenolpyruvate synthase n=11 Tax=Escherichia coli RepID=C6ECQ5_ECOBD
L3_122_031G1_scaffold_467_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29935..30768
DNA (834bp) protein (278aa)
Phosphoenolpyruvate synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; Short=PEP synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062};; Short=PSRP {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.11.33 {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.4.28 {ECO:0000256|HAMAP-Rule:MF_01062};; Pyruvate, water dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; TaxID=1182658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE51.;"
Phosphoenolpyruvate synthase regulatory protein n=1208 Tax=Enterobacteriaceae RepID=PSRP_ECO24
hypothetical protein
L3_122_031G1_scaffold_467_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30925..31971
DNA (1047bp) protein (349aa)
aroH; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1268976 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113290.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase (Fragment) n=1 Tax=Escherichia coli MS 175-1 RepID=D8B8P5_ECOLX
L3_122_031G1_scaffold_467_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32103..32294
DNA (192bp) protein (64aa)
Uncharacterized protein YdiE n=756 Tax=Enterobacteriaceae RepID=YDIE_ECO57
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHW17692.1}; TaxID=868172 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC8C.;"
Displaying items 1-30 of 37 in total

View Taxonomy