ggKbase home page

L3_122_031G1_scaffold_562

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_031G1_scaffold_562_1
Trabulsiella guamensis, Trabulsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..588
DNA (588bp) protein (196aa)
Alkyl hydroperoxide reductase protein F {ECO:0000313|EMBL:KFC03222.1}; EC=1.-.-.- {ECO:0000313|EMBL:KFC03222.1};; EC=1.6.-.- {ECO:0000313|EMBL:KFC03222.1};; EC=1.8.1.- {ECO:0000313|EMBL:KFC03222.1};; TaxID=1005994 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Trabulsiella.;" source="Trabulsiella guamensis ATCC 49490.;"
Alkyl hydroperoxide reductase subunit F n=1 Tax=Enterobacter sp. R4-368 RepID=R9VRF7_9ENTR
alkyl hydroperoxide reductase
L3_122_031G1_scaffold_562_2
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(708..1136)
DNA (429bp) protein (143aa)
Universal stress protein G n=1 Tax=Enterobacter cloacae S611 RepID=V5AX94_ENTCL
Universal stress protein G {ECO:0000313|EMBL:ESS58272.1}; TaxID=1399146 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae S611.;"
universal stress protein UspG
L3_122_031G1_scaffold_562_3
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1488..1898)
DNA (411bp) protein (137aa)
Prokaryotic transcription elongation factor GreA/GreB n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J2IM49_9ENTR
Regulator of nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00954}; TaxID=1455607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans UMEnt01/12.;"
nucleoside diphosphate kinase regulator
L3_122_031G1_scaffold_562_4
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2070..2879)
DNA (810bp) protein (270aa)
Ribonuclease I {ECO:0000313|EMBL:ESS58276.1}; EC=3.1.27.6 {ECO:0000313|EMBL:ESS58276.1};; TaxID=1399146 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae S611.;"
Ribonuclease I n=1 Tax=Enterobacter cloacae S611 RepID=V5CSH1_ENTCL
ribonuclease I
L3_122_031G1_scaffold_562_5
Kosakonia sacchari, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2977..4350)
DNA (1374bp) protein (458aa)
C4-dicarboxylate ABC transporter n=1 Tax=Enterobacter cloacae RepID=UPI0002E91DE2
dcuC; C4-dicarboxylate transporter
C4-dicarboxylate transporter {ECO:0000313|EMBL:AHJ74777.1}; TaxID=1235834 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia sacchari SP1.;"
L3_122_031G1_scaffold_562_6
Kosakonia sacchari, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4754..5113
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Enterobacter cloacae RepID=UPI00031584E9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIA25131.1}; TaxID=1235834 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia sacchari SP1.;"
L3_122_031G1_scaffold_562_7
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5168..5512
DNA (345bp) protein (115aa)
Copper binding periplasmic CusF family protein n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J2IM53_9ENTR
Copper binding periplasmic CusF family protein {ECO:0000313|EMBL:EJI88392.1}; TaxID=1177180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans DSM 16656.;"
copper-binding protein
L3_122_031G1_scaffold_562_8
Enterobacter sp. YD4, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5523..6779
DNA (1257bp) protein (419aa)
Outer membrane efflux family protein n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J1QAT3_9ENTR
LG58.unitig_0_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIS41858.1}; TaxID=1544796 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. YD4.;"
heavy metal RND transporter
L3_122_031G1_scaffold_562_9
Enterobacter sp. YD4, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6776..8248
DNA (1473bp) protein (491aa)
Cobalt transporter n=1 Tax=Enterobacter sp. R4-368 RepID=R9VSG0_9ENTR
LG58.unitig_0_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIS41208.1}; TaxID=1544796 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. YD4.;"
cobalt transporter
L3_122_031G1_scaffold_562_10
Enterobacter sp. YD4, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8245..11364
DNA (3120bp) protein (1040aa)
Heavy metal efflux pump, CzcA family protein n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J1YK16_9ENTR
LG58.unitig_0_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIS44305.1}; TaxID=1544796 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. YD4.;"
cation transporter
L3_122_031G1_scaffold_562_11
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11583..11792
DNA (210bp) protein (70aa)
Cold shock protein CspE n=10 Tax=Enterobacteriaceae RepID=B5XZT0_KLEP3
cold-shock protein
Cold shock-like protein CspE {ECO:0000313|EMBL:EWD83237.1}; TaxID=1400171 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae UCI 18.;"
L3_122_031G1_scaffold_562_12
Kosakonia sacchari, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11848..12231)
DNA (384bp) protein (128aa)
Putative fluoride ion transporter CrcB n=1 Tax=Enterobacter sp. R4-368 RepID=R9VW78_9ENTR
camphor resistance protein CrcB
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1235834 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia sacchari SP1.;"
L3_122_031G1_scaffold_562_13
Kosakonia sacchari, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12320..13108
DNA (789bp) protein (263aa)
hydrolase n=1 Tax=Enterobacter cloacae RepID=UPI0002D4D9B9
hydrolase
Hydrolase {ECO:0000313|EMBL:AHJ74771.1}; TaxID=1235834 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia sacchari SP1.;"
L3_122_031G1_scaffold_562_14
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13236..13439
DNA (204bp) protein (68aa)
Probable Sec-independent protein translocase protein TatE n=5 Tax=Enterobacter RepID=K4YEU5_9ENTR
Probable Sec-independent protein translocase protein TatE {ECO:0000256|HAMAP-Rule:MF_00903}; TaxID=1334630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae EC_38VIM1.;"
Sec-independent protein translocase protein tatA/E-like protein
L3_122_031G1_scaffold_562_15
Kosakonia sacchari, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13515..14480)
DNA (966bp) protein (322aa)
lipoyl synthase (EC:2.8.1.8)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1235834 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia sacchari SP1.;"
lipoyl synthase n=1 Tax=Enterobacter cloacae RepID=UPI00030FB9A3
L3_122_031G1_scaffold_562_16
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14690..15643)
DNA (954bp) protein (318aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J2IM60_9ENTR
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:EJI88402.1}; TaxID=1177180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans DSM 16656.;"
LysR family transcriptional regulator
L3_122_031G1_scaffold_562_17
Enterobacter sp. R4-368, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15952..16593)
DNA (642bp) protein (214aa)
lipoate--protein ligase (EC:2.3.1.181)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=1166130 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. R4-368.;"
Octanoyltransferase n=1 Tax=Enterobacter sp. R4-368 RepID=R9VW82_9ENTR
L3_122_031G1_scaffold_562_18
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16682..16945)
DNA (264bp) protein (88aa)
UPF0250 protein Y71_1485 n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J1YK23_9ENTR
UPF0250 protein AW40_04400 {ECO:0000256|HAMAP-Rule:MF_00659}; TaxID=1455607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans UMEnt01/12.;"
hypothetical protein
L3_122_031G1_scaffold_562_19
Enterobacter sp. R4-368, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17048..18259)
DNA (1212bp) protein (404aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:AGN87702.1}; EC=3.4.16.4 {ECO:0000313|EMBL:AGN87702.1};; TaxID=1166130 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. R4-368.;"
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Enterobacter sp. R4-368 RepID=R9VSH0_9ENTR
L3_122_031G1_scaffold_562_20
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18398..19543)
DNA (1146bp) protein (382aa)
Rare lipoprotein A n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J2IM65_9ENTR
Rare lipoprotein A {ECO:0000313|EMBL:EJI88407.1}; TaxID=1177180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans DSM 16656.;"
hypothetical protein
L3_122_031G1_scaffold_562_21
Escherichia vulneris, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19554..20666)
DNA (1113bp) protein (371aa)
Cell wall shape-determining protein n=1 Tax=Enterobacter sp. R4-368 RepID=R9VVV0_9ENTR
Rod shape-determining protein RodA {ECO:0000313|EMBL:GAL58774.1}; TaxID=1115515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia vulneris NBRC 102420.;"
cell wall shape-determining protein
L3_122_031G1_scaffold_562_22
Enterobacter sp. R4-368, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20669..22570)
DNA (1902bp) protein (634aa)
penicillin-binding protein 2 n=1 Tax=Enterobacter cloacae RepID=UPI0003098694
penicillin-binding protein 2
Penicillin-binding protein 2 {ECO:0000313|EMBL:AGN87704.1}; TaxID=1166130 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. R4-368.;"
L3_122_031G1_scaffold_562_23
Enterobacter sp. 35683, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22597..23031)
DNA (435bp) protein (145aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1619251 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35683.;"
Ribosomal RNA large subunit methyltransferase H n=27 Tax=cellular organisms RepID=D5CHK0_ENTCC
50S rRNA methyltransferase
L3_122_031G1_scaffold_562_24
Trabulsiella guamensis, Trabulsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23068..23385)
DNA (318bp) protein (106aa)
Ribosomal silencing factor RsfS n=2 Tax=Enterobacteriaceae RepID=M9VYZ6_RAOOR
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1005994 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Trabulsiella.;" source="Trabulsiella guamensis ATCC 49490.;"
ribosome-associated protein
L3_122_031G1_scaffold_562_25
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23648..24259)
DNA (612bp) protein (204aa)
Alpha-ribazole phosphatase {ECO:0000313|EMBL:EJI88412.1}; EC=3.1.3.73 {ECO:0000313|EMBL:EJI88412.1};; TaxID=1177180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans DSM 16656.;"
Alpha-ribazole phosphatase n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J2IM70_9ENTR
alpha-ribazole phosphatase
L3_122_031G1_scaffold_562_26
Enterobacter sp. R4-368, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24357..25448
DNA (1092bp) protein (364aa)
threonine-phosphate decarboxylase (EC:4.1.1.81)
Threonine-phosphate decarboxylase {ECO:0000313|EMBL:AGN87709.1}; EC=4.1.1.81 {ECO:0000313|EMBL:AGN87709.1};; TaxID=1166130 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. R4-368.;"
Threonine-phosphate decarboxylase n=1 Tax=Enterobacter sp. R4-368 RepID=R9VRI1_9ENTR
L3_122_031G1_scaffold_562_27
Kosakonia sacchari, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25423..26073)
DNA (651bp) protein (217aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1235834 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia sacchari SP1.;"
nicotinic acid mononucleotide adenylyltransferase n=1 Tax=Enterobacter cloacae RepID=UPI000380FDF4
nicotinate-nucleotide adenylyltransferase
L3_122_031G1_scaffold_562_28
Enterobacter sp. R4-368, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26066..27097)
DNA (1032bp) protein (344aa)
DNA polymerase III subunit delta n=1 Tax=Enterobacter sp. R4-368 RepID=R9VTU0_9ENTR
holA; DNA polymerase III subunit delta
DNA polymerase III subunit delta {ECO:0000313|EMBL:AGN87711.1}; TaxID=1166130 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. R4-368.;"
L3_122_031G1_scaffold_562_29
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27097..27645)
DNA (549bp) protein (183aa)
LPS-assembly lipoprotein lptE n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J1QRW0_9ENTR
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186, ECO:0000256|SAAS:SAAS00074334}; Flags: Precursor;; TaxID=1177180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans DSM 16656.;"
LPS-assembly lipoprotein RlpB
L3_122_031G1_scaffold_562_30
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27660..30242)
DNA (2583bp) protein (861aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1455607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans UMEnt01/12.;"
Leucine--tRNA ligase n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J2IM75_9ENTR
leucyl-tRNA synthetase
Displaying items 1-30 of 33 in total

View Taxonomy