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L3_122_031G1_scaffold_1416

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_031G1_scaffold_1416_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(66..1031)
DNA (966bp) protein (322aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1182682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE75.;"
tRNA-dihydrouridine synthase B n=1312 Tax=cellular organisms RepID=DUSB_ECO57
dusB; tRNA-dihydrouridine synthase B
L3_122_031G1_scaffold_1416_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1360..2241)
DNA (882bp) protein (294aa)
prmA; 50S ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
Ribosomal protein L11 methyltransferase n=1203 Tax=Enterobacteriaceae RepID=PRMA_ECO24
L3_122_031G1_scaffold_1416_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2253..3704)
DNA (1452bp) protein (484aa)
Sodium/pantothenate symporter n=726 Tax=Enterobacteriaceae RepID=PANF_ECOLI
panF; sodium/panthothenate symporter
Sodium/pantothenate symporter {ECO:0000313|EMBL:KDZ16335.1}; TaxID=1444185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-474-04_S3_C3.;"
L3_122_031G1_scaffold_1416_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3694..3936)
DNA (243bp) protein (81aa)
Uncharacterized protein YhdT n=210 Tax=Escherichia RepID=YHDT_ECOLI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEJ66513.1}; TaxID=1444165 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S3_C2.;"
L3_122_031G1_scaffold_1416_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4045..5394)
DNA (1350bp) protein (450aa)
accC; biotin carboxylase (EC:6.3.4.14 6.4.1.2)
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:EKI50067.1}; EC=6.3.4.14 {ECO:0000313|EMBL:EKI50067.1};; TaxID=1005567 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli N1.;"
Biotin carboxylase n=697 Tax=Enterobacteriaceae RepID=ACCC_ECOLI
L3_122_031G1_scaffold_1416_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5405..5875)
DNA (471bp) protein (157aa)
Biotin carboxyl carrier protein of acetyl-CoA carboxylase n=1328 Tax=Enterobacteriaceae RepID=BCCP_ECO57
accB; acetyl CoA carboxylase, BccP subunit
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:EGI09649.1}; TaxID=656414 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H736.;"
L3_122_031G1_scaffold_1416_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5926..6087
DNA (162bp) protein (54aa)
Uncharacterized protein n=72 Tax=Escherichia coli RepID=J7QWC2_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EID68048.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
L3_122_031G1_scaffold_1416_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6762..7736)
DNA (975bp) protein (325aa)
Probable acrylyl-CoA reductase AcuI n=168 Tax=cellular organisms RepID=ACUI_ECOLI
quinone oxidoreductase, YhdH/YhfP family
Protein yhdH {ECO:0000313|EMBL:AEJ58653.1}; TaxID=1050617 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMNF18.;"
L3_122_031G1_scaffold_1416_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7888..9828
DNA (1941bp) protein (647aa)
RNase E specificity factor CsrD n=165 Tax=Escherichia RepID=CSRD_ECOLI
RNase E specificity factor CsrD {ECO:0000313|EMBL:KDX43450.1}; TaxID=1444151 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-177-06_S3_C2.;"
regulatory protein CsrD
L3_122_031G1_scaffold_1416_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10133..11176
DNA (1044bp) protein (348aa)
Regulator of ftsI n=18 Tax=Enterobacteriaceae RepID=C3SRN8_ECOLX
rod shape-determining protein MreB
Rod shape-determining protein mreB {ECO:0000313|EMBL:EQN24357.1}; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 6 (3-8296502).;"
L3_122_031G1_scaffold_1416_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11242..12345
DNA (1104bp) protein (368aa)
Cell shape-determining protein MreC n=217 Tax=Escherichia RepID=MREC_ECOLI
mreC; rod shape-determining protein MreC
Rod shape-determining protein MreC {ECO:0000313|EMBL:ESD84470.1}; TaxID=1268998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908573.;"
L3_122_031G1_scaffold_1416_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12345..12833
DNA (489bp) protein (163aa)
mreD; rod shape-determining protein (EC:2.7.3.-)
Rod shape-determining protein MreD n=1396 Tax=Enterobacteriaceae RepID=MRED_ECO57
Rod shape-determining protein MreD {ECO:0000313|EMBL:KEJ44564.1}; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
L3_122_031G1_scaffold_1416_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12842..13435
DNA (594bp) protein (198aa)
Maf-like protein YhdE n=148 Tax=Bacteria RepID=YHDE_ECOLI
yhdE; Maf-like protein
Maf-like protein YceF {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1269007 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 909945-2.;"
L3_122_031G1_scaffold_1416_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13425..14894
DNA (1470bp) protein (490aa)
Ribonuclease G n=1342 Tax=Enterobacteriaceae RepID=RNG_ECO57
rng; ribonuclease G
Ribonuclease G {ECO:0000313|EMBL:AEE58536.1}; TaxID=696406 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMNK88.;"
L3_122_031G1_scaffold_1416_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14962..18762
DNA (3801bp) protein (1267aa)
Conserved membrane protein, predicted transporter n=2 Tax=Escherichia coli RepID=C6EGL5_ECOBD
Uncharacterized protein YhdP {ECO:0000313|EMBL:ACT27571.1}; Flags: Precursor;; TaxID=469008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain B / BL21-DE3).;"
yhdP; membrane protein
L3_122_031G1_scaffold_1416_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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19077..20522
DNA (1446bp) protein (482aa)
Protein TldD n=1039 Tax=Enterobacteriaceae RepID=TLDD_ECOL6
tldD; protein TldD
Protein tldD {ECO:0000313|EMBL:ETY42095.1}; TaxID=1328434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli BWH 40.;"
L3_122_031G1_scaffold_1416_17
Escherichia sp. KTE114, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20650..21579)
DNA (930bp) protein (310aa)
HTH-type transcriptional activator AaeR n=1295 Tax=Enterobacteriaceae RepID=AAER_ECO57
putative DNA-binding transcriptional regulator
HTH-type transcriptional activator AaeR {ECO:0000313|EMBL:EOU45911.1}; TaxID=1169321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE114.;"
L3_122_031G1_scaffold_1416_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21762..21965
DNA (204bp) protein (68aa)
Uncharacterized protein n=32 Tax=Enterobacteriaceae RepID=J7Q9Z4_ECOLX
yhcR; hypothetical protein
Protein AaeX {ECO:0000256|HAMAP-Rule:MF_01546, ECO:0000256|SAAS:SAAS00052271}; TaxID=244319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O26:H11.;"
L3_122_031G1_scaffold_1416_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21973..22905
DNA (933bp) protein (311aa)
p-hydroxybenzoic acid efflux pump subunit AaeA n=617 Tax=Enterobacteriaceae RepID=AAEA_ECO27
aaeA; p-hydroxybenzoic acid efflux subunit AaeA
p-hydroxybenzoic acid efflux pump subunit AaeA {ECO:0000256|HAMAP-Rule:MF_01544, ECO:0000256|SAAS:SAAS00016406}; Short=pHBA efflux pump protein A {ECO:0000256|HAMAP-Rule:MF_01544};; TaxID=1268975 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 110957.;"
L3_122_031G1_scaffold_1416_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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22911..24878
DNA (1968bp) protein (656aa)
p-hydroxybenzoic acid efflux pump subunit AaeB n=10 Tax=Escherichia coli RepID=C6EGM0_ECOBD
p-hydroxybenzoic acid efflux pump subunit AaeB {ECO:0000256|HAMAP-Rule:MF_01545, ECO:0000256|SAAS:SAAS00166132}; Short=pHBA efflux pump protein B {ECO:0000256|HAMAP-Rule:MF_01545};; TaxID=749547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 187-1.;"
aaeB; AaeAB Hydroxylated, Aromatic Carboxylic Acid Efflux Transport System Protein B, subunit of AaeAB Hydroxylated, Aromatic Carboxylic Acid Efflux Transport System
L3_122_031G1_scaffold_1416_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24970..25242
DNA (273bp) protein (91aa)
Uncharacterized protein n=244 Tax=Enterobacteriaceae RepID=J7QWB0_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDG92861.1}; TaxID=1438695 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UCI 65.;"
L3_122_031G1_scaffold_1416_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25298..25561)
DNA (264bp) protein (88aa)
Protein YcfR n=21 Tax=Escherichia coli RepID=C6EGM2_ECOBD
yhcN; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENC89694.1}; TaxID=1116072 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.11.;"
L3_122_031G1_scaffold_1416_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25926..26396)
DNA (471bp) protein (157aa)
Arginine repressor n=1032 Tax=Enterobacteriaceae RepID=ARGR_ECO24
arginine repressor
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1438695 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UCI 65.;"
L3_122_031G1_scaffold_1416_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26831..27769
DNA (939bp) protein (313aa)
mdh; Malate dehydrogenase (EC:1.1.1.37)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01516, ECO:0000256|RuleBase:RU000422}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_01516, ECO:0000256|RuleBase:RU000422};; TaxID=869688 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2.3916.;"
Malate dehydrogenase n=1092 Tax=Enterobacteriaceae RepID=MDH_ECO24
L3_122_031G1_scaffold_1416_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27831..28898)
DNA (1068bp) protein (356aa)
Periplasmic serine peptidase DegS n=216 Tax=Bacteria RepID=A7ZSC9_ECO24
serine endoprotease
Periplasmic serine peptidase DegS {ECO:0000313|EMBL:ESA94696.1}; TaxID=1269007 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 909945-2.;"
L3_122_031G1_scaffold_1416_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28988..30355)
DNA (1368bp) protein (456aa)
Periplasmic pH-dependent serine endoprotease DegQ n=684 Tax=Enterobacteriaceae RepID=DEGQ_ECOLI
degQ; serine endoprotease
Serine endoprotease {ECO:0000313|EMBL:EFE62078.2}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
L3_122_031G1_scaffold_1416_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(30509..30907)
DNA (399bp) protein (133aa)
Inner membrane protein YhcB n=1373 Tax=Enterobacteriaceae RepID=YHCB_ECOLI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZE57893.1}; TaxID=1446549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O118:H16 str. 2009C-4446.;"
L3_122_031G1_scaffold_1416_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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31101..32228
DNA (1128bp) protein (376aa)
ATPase, AFG1 family n=21 Tax=Escherichia coli RepID=A8A541_ECOHS
yhcM; ATPase
AFG1-family ATPase {ECO:0000313|EMBL:ACT27585.1}; TaxID=469008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain B / BL21-DE3).;"
Displaying 28 items

View Taxonomy