ggKbase home page

L3_122_123G1_scaffold_3

Search features with annotation key words

Displaying items 1-30 of 342 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_123G1_scaffold_3_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

240..860
DNA (621bp) protein (207aa)
Transcriptional regulator TetR family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHZ5_9CLOT
Transcriptional regulator TetR family {ECO:0000313|EMBL:CDD43034.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Transcriptional regulator
L3_122_123G1_scaffold_3_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

920..1405
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZA38_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD43035.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_122_123G1_scaffold_3_3
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1496..2593)
DNA (1098bp) protein (366aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ILC1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41089.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_122_123G1_scaffold_3_4
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2723..3742)
DNA (1020bp) protein (340aa)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWD2_9CLOT
Pseudouridine synthase {ECO:0000313|EMBL:CCY41087.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
RluA family pseudouridine synthase
L3_122_123G1_scaffold_3_5
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3779..4531)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWL4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41086.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Short-chain dehydrogenases of various substrate specificities
L3_122_123G1_scaffold_3_6
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4574..6469)
DNA (1896bp) protein (632aa)
UPF0313 protein CLOBOL_03961 n=4 Tax=Clostridium bolteae RepID=A8RUB4_9CLOT
UPF0313 protein CLOBOL_03961 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
radical SAM protein
L3_122_123G1_scaffold_3_7
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6466..7131)
DNA (666bp) protein (222aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IG97_9CLOT
HAD-superfamily hydrolase
L3_122_123G1_scaffold_3_8
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7172..7996)
DNA (825bp) protein (275aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IG97_9CLOT
pseudouridine synthase
L3_122_123G1_scaffold_3_9
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7987..9480)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6K481_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB64881.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
Fmu (Sun) domain-containing protein
L3_122_123G1_scaffold_3_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9599..11623)
DNA (2025bp) protein (675aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI0002F0BB30
Diguanylate cyclase domain protein {ECO:0000313|EMBL:AIY81273.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
signaling protein
L3_122_123G1_scaffold_3_11
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11788..12744
DNA (957bp) protein (319aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HLR6_9CLOT
Sporulation integral membrane protein YlbJ {ECO:0000313|EMBL:KJJ76500.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
nucleoside recognition domain-containing protein
L3_122_123G1_scaffold_3_12
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12741..13430)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWC8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41082.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_122_123G1_scaffold_3_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13444..13941)
DNA (498bp) protein (166aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
pantetheine-phosphate adenylyltransferase, bacterial (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWL0_9CLOT
L3_122_123G1_scaffold_3_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13942..14499)
DNA (558bp) protein (186aa)
RsmD family RNA methyltransferase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IG91_9CLOT
RsmD family RNA methyltransferase {ECO:0000313|EMBL:CCY41080.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
methyltransferase
L3_122_123G1_scaffold_3_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14661..14864)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ILB4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41079.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
alpha/beta type small acid-soluble spore protein
L3_122_123G1_scaffold_3_16
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15020..15535)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6K463_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB64866.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
Nitroreductase
L3_122_123G1_scaffold_3_17
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15552..17609)
DNA (2058bp) protein (686aa)
ATP-dependent DNA helicase RecG n=1 Tax=Clostridium sp. CAG:7 RepID=R5IG46_9CLOT
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CCY41078.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ATP-dependent DNA helicase RecG
L3_122_123G1_scaffold_3_18
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17606..18487)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWC6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41077.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ROK family protein
L3_122_123G1_scaffold_3_19
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18575..19285)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ILB0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41074.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Integral membrane protein, interacts with FtsH
L3_122_123G1_scaffold_3_20
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19307..21016)
DNA (1710bp) protein (570aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWC1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41072.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
DAK2 domain fusion protein YloV
L3_122_123G1_scaffold_3_21
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21030..21386)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IG81_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41070.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_122_123G1_scaffold_3_22
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


21560..21745
DNA (186bp) protein (62aa)
50S ribosomal protein L28 n=2 Tax=Clostridiales RepID=C5EUI5_9FIRM
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
50S ribosomal protein L28
L3_122_123G1_scaffold_3_23
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21799..21936)
DNA (138bp) protein (46aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=A8RUE6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ10604.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
hypothetical protein
L3_122_123G1_scaffold_3_24
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22042..22470)
DNA (429bp) protein (143aa)
Sporulation protein YtfJ n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EUI3_9FIRM
Sporulation protein YtfJ (Spore_YtfJ) {ECO:0000313|EMBL:KJJ76520.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
Sporulation protein YtfJ
L3_122_123G1_scaffold_3_25
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22516..23421)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWJ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41066.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_122_123G1_scaffold_3_26
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23433..23753)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IG76_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41065.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_122_123G1_scaffold_3_27
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23766..25076)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ILA4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41064.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_122_123G1_scaffold_3_28
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25088..26344)
DNA (1257bp) protein (419aa)
Putative competence-damage inducible protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EUH9_9FIRM
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
competence/damage-inducible protein CinA
L3_122_123G1_scaffold_3_29
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26346..26888)
DNA (543bp) protein (181aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8RUF2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX96950.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
L3_122_123G1_scaffold_3_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26872..28254)
DNA (1383bp) protein (461aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
SSU ribosomal protein S12P methylthiotransferase (EC:1.3.1.74 2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWJ1_9CLOT
Displaying items 1-30 of 342 in total

View Taxonomy