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L3_122_123G1_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 320 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_123G1_scaffold_4_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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3..506
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGL8_BIFBI
Putative cell surface protein {ECO:0000313|EMBL:BAQ97658.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_122_123G1_scaffold_4_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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791..1324
DNA (534bp) protein (178aa)
Transcriptional regulator, MarR family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C0F4_BIFBI
Transcriptional regulator {ECO:0000313|EMBL:CDB23004.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
slyA; transcriptional regulator
L3_122_123G1_scaffold_4_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1321..3204
DNA (1884bp) protein (628aa)
ATP-binding cassette, subfamily B n=2 Tax=Bifidobacterium bifidum RepID=E3ELZ6_BIFBS
ATP-binding cassette, subfamily B
ATP-binding cassette, subfamily B {ECO:0000313|EMBL:ADO52692.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_122_123G1_scaffold_4_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3201..5216
DNA (2016bp) protein (672aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGM1_BIFBI
mdlB; ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:AFL04034.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_122_123G1_scaffold_4_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5453..6439)
DNA (987bp) protein (329aa)
Phospholipase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P077_BIFBP
phospholipase
Phospholipase {ECO:0000313|EMBL:EKF16636.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_122_123G1_scaffold_4_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6518..7327)
DNA (810bp) protein (270aa)
murI; glutamate racemase (EC:5.1.1.3)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Glutamate racemase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GF52_9BIFI
L3_122_123G1_scaffold_4_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7555..8454
DNA (900bp) protein (300aa)
Diaminopimelate epimerase {ECO:0000256|SAAS:SAAS00028055}; EC=5.1.1.7 {ECO:0000256|SAAS:SAAS00028063};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Diaminopimelate epimerase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMX0_9BIFI
dapF; diaminopimelate epimerase
L3_122_123G1_scaffold_4_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8555..9214)
DNA (660bp) protein (220aa)
Vitamin K epoxide reductase n=3 Tax=Bifidobacterium bifidum RepID=I3WGM6_BIFBI
vitamin K epoxide reductase
Vitamin K epoxide reductase {ECO:0000313|EMBL:EKF15603.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_122_123G1_scaffold_4_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9350..10231
DNA (882bp) protein (294aa)
PHP domain protein n=3 Tax=Bifidobacterium bifidum RepID=U2DQR9_BIFBI
putative metal-dependent phosphoesterase
PHP domain containing protein {ECO:0000313|EMBL:KFI42545.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_122_123G1_scaffold_4_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10390..10614)
DNA (225bp) protein (75aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=K2M115_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22996.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_122_123G1_scaffold_4_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10771..12249)
DNA (1479bp) protein (493aa)
Aminoglycoside phospho transferase n=2 Tax=Bifidobacterium bifidum RepID=I3WGM9_BIFBI
aminoglycoside phospho transferase
Aminoglycoside phospho transferase {ECO:0000313|EMBL:AFL04042.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_122_123G1_scaffold_4_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12288..13892
DNA (1605bp) protein (535aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
DNA helicaseII-like protein n=2 Tax=Bifidobacterium bifidum RepID=E4P084_BIFBP
uvrD; putative DNA helicase II-like protein
L3_122_123G1_scaffold_4_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13949..15493)
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HSH1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50373.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_122_123G1_scaffold_4_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15555..16403
DNA (849bp) protein (283aa)
Lon protease (S16) C-terminal proteolytic domain n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I6C0_BIFBI
Lon protease (S16) C-terminal proteolytic domain {ECO:0000313|EMBL:EKE50374.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Lon protease (S16) C-terminal proteolytic domain
L3_122_123G1_scaffold_4_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16599..17024
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C0H1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83964.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_122_123G1_scaffold_4_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17208..18251)
DNA (1044bp) protein (348aa)
Transcriptional regulator, LacI family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CHD9_BIFBI
Transcriptional regulator, LacI family {ECO:0000313|EMBL:KFI42552.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ccpA; glucose-resistance amylase regulator
L3_122_123G1_scaffold_4_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18396..18770)
DNA (375bp) protein (125aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=E4V8A0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE50377.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_122_123G1_scaffold_4_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18874..19770)
DNA (897bp) protein (299aa)
thiD; phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:AFL04049.1}; EC=2.7.4.7 {ECO:0000313|EMBL:AFL04049.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Phosphomethylpyrimidine kinase n=3 Tax=Bifidobacterium RepID=I3WGN6_BIFBI
L3_122_123G1_scaffold_4_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19839..21086
DNA (1248bp) protein (416aa)
ATPase family associated with various cellular activities (AAA) n=6 Tax=Bifidobacterium RepID=E3EM12_BIFBS
ATPase, AAA family {ECO:0000313|EMBL:EFR49844.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
ATPase family associated with various cellular activities (AAA)
L3_122_123G1_scaffold_4_20
unknown

Not on your lists

21199..21735
DNA (537bp) protein (179aa)

This feature has no annotations

L3_122_123G1_scaffold_4_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21676..22149)
DNA (474bp) protein (158aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WGN8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42556.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_122_123G1_scaffold_4_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22272..25028)
DNA (2757bp) protein (919aa)
Phosphomethylpyrimidine synthase {ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|SAAS:SAAS00007809};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
thiC; thiamine biosynthesis protein (EC:2.5.1.3)
Thiamine biosynthesis protein n=4 Tax=Bifidobacterium bifidum RepID=I3WGN9_BIFBI
L3_122_123G1_scaffold_4_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25123..26016)
DNA (894bp) protein (298aa)
thiM; hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Hydroxyethylthiazole kinase n=7 Tax=Bifidobacterium RepID=E3EMP4_BIFBS
L3_122_123G1_scaffold_4_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26410..32217
DNA (5808bp) protein (1936aa)
LPXTG-motif protein cell wall anchor domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C0I1_BIFBI
Beta-galactosidase {ECO:0000313|EMBL:BAQ97681.1}; LPXTG-motif protein cell wall anchor domain protein {ECO:0000313|EMBL:ERI83974.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
beta-galactosidase BbgIII
L3_122_123G1_scaffold_4_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


32393..33913
DNA (1521bp) protein (507aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H9U0_9BIFI
L3_122_123G1_scaffold_4_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34004..35284
DNA (1281bp) protein (427aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2MSF0_BIFBI
hypothetical protein
Putative TIM-barrel protein {ECO:0000313|EMBL:ADO52714.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_122_123G1_scaffold_4_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35433..36713
DNA (1281bp) protein (427aa)
Cell division protein FtsZ n=8 Tax=Bifidobacterium bifidum RepID=E3EMP8_BIFBS
ftsZ; cell division protein
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_122_123G1_scaffold_4_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36735..37205
DNA (471bp) protein (157aa)
Cell division protein SepF n=8 Tax=Bifidobacterium RepID=E3EMP9_BIFBS
hypothetical protein
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_122_123G1_scaffold_4_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37333..37614
DNA (282bp) protein (94aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=E4V8B3_BIFBI
tlyC; putative hemolysin
Conserved hypothetical membrane spanning protein with YGGT family {ECO:0000313|EMBL:CDB22978.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_122_123G1_scaffold_4_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37724..39025
DNA (1302bp) protein (434aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WGP7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04060.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Displaying items 1-30 of 320 in total

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