ggKbase home page

L3_122_123G1_scaffold_157

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_123G1_scaffold_157_1
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(202..612)
DNA (411bp) protein (137aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6H9_9ACTN
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:EBA40338.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_122_123G1_scaffold_157_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(998..2131)
DNA (1134bp) protein (378aa)
4Fe-4S binding domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CP82_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDY32988.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
coenzyme F420-reducing hydrogenase, beta subunit
L3_122_123G1_scaffold_157_3
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2121..3674)
DNA (1554bp) protein (518aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQ38_9FIRM
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:CCX82308.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L3_122_123G1_scaffold_157_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3692..4819)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. XPD2006 RepID=UPI0003B5472C
Uncharacterized protein {ECO:0000313|EMBL:EDY32981.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_122_123G1_scaffold_157_5
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4822..6060)
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B5934E
hypothetical protein
O-antigen polymerase {ECO:0000313|EMBL:EDS20742.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L3_122_123G1_scaffold_157_6
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6073..6996)
DNA (924bp) protein (308aa)
Glycosyltransferases involved in cell wall biogenesis n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZG0_9FIRM
Glycosyltransferases involved in cell wall biogenesis
Glycosyltransferases involved in cell wall biogenesis {ECO:0000313|EMBL:CBL27170.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_122_123G1_scaffold_157_7
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7010..7504)
DNA (495bp) protein (165aa)
Serine acetyltransferase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VLP9_9FIRM
Serine acetyltransferase {ECO:0000313|EMBL:CDC95159.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Serine O-acetyltransferase
L3_122_123G1_scaffold_157_8
Coprococcus sp. CAG:131, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7501..8592)
DNA (1092bp) protein (364aa)
Eps3J n=1 Tax=Coprococcus sp. CAG:131 RepID=R6L8E2_9FIRM
Eps3J {ECO:0000313|EMBL:CDB79794.1}; TaxID=1262862 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:131.;"
Capsular polysaccharide biosynthesis protein
L3_122_123G1_scaffold_157_9
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8852..9742)
DNA (891bp) protein (297aa)
Putative uncharacterized protein n=1 Tax=Gordonibacter pamelaeae 7-10-1-b RepID=D6E6D5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73614.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_122_123G1_scaffold_157_10
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9739..10047)
DNA (309bp) protein (103aa)
Glycosyltransferase family 28 protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YDM1_9FIRM
Glycosyltransferase family 28 protein {ECO:0000313|EMBL:CDA25618.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
EpsH protein
L3_122_123G1_scaffold_157_11
unknown

Not on your lists

10048..10287
DNA (240bp) protein (80aa)

This feature has no annotations

L3_122_123G1_scaffold_157_12
Bifidobacterium merycicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10243..10716)
DNA (474bp) protein (158aa)
Oligosaccharide biosynthesis protein Alg14 like protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RE91_9FIRM
EpsG {ECO:0000313|EMBL:KFI69624.1}; TaxID=78345 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium merycicum.;"
EpsG protein
L3_122_123G1_scaffold_157_13
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10720..12018)
DNA (1299bp) protein (433aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6H9_9ACTN
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:EBA40338.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_122_123G1_scaffold_157_14
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12018..12782)
DNA (765bp) protein (255aa)
Bacterial sugar transferase {ECO:0000313|EMBL:EBA40495.1}; EC=2.4.1.- {ECO:0000313|EMBL:EBA40495.1};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Bacterial sugar transferase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Y6_9ACTN
undecaprenyl-phosphate galactose phosphotransferase
L3_122_123G1_scaffold_157_15
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12835..13386)
DNA (552bp) protein (184aa)
Conserved domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6I1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73382.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
NusG antitermination factor
L3_122_123G1_scaffold_157_16
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14298..14918)
DNA (621bp) protein (207aa)
Thiamine diphosphokinase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8X5_9ACTN
Thiamine pyrophosphokinase {ECO:0000313|EMBL:KGI73381.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
thiamine pyrophosphokinase
L3_122_123G1_scaffold_157_17
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14964..15653)
DNA (690bp) protein (230aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6I4_9ACTN
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EBA40343.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
thiamine pyrophosphokinase
L3_122_123G1_scaffold_157_18
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

15985..18270
DNA (2286bp) protein (762aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
1,4-alpha-glucan-branching protein (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6I5_9ACTN
L3_122_123G1_scaffold_157_19
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

18365..20791
DNA (2427bp) protein (809aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
glycogen/starch/alpha-glucan phosphorylase (EC:2.4.1.1)
Phosphorylase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZB63_9ACTN
L3_122_123G1_scaffold_157_20
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

20900..22048
DNA (1149bp) protein (383aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
nucleotidyl transferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=2 Tax=Collinsella RepID=A4E6I7_9ACTN
L3_122_123G1_scaffold_157_21
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

22053..23180
DNA (1128bp) protein (376aa)
Glucose-1-phosphate adenylyltransferase, GlgD subunit {ECO:0000313|EMBL:EBA40347.1}; EC=2.7.7.27 {ECO:0000313|EMBL:EBA40347.1};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
glucose-1-phosphate adenylyltransferase subunit GlgD (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase, GlgD subunit n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6I8_9ACTN
L3_122_123G1_scaffold_157_22
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

23271..25586
DNA (2316bp) protein (772aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
glycogen/starch synthase (EC:2.4.1.21)
Glycogen synthase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8S3_9ACTN
L3_122_123G1_scaffold_157_23
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

26018..29314
DNA (3297bp) protein (1099aa)
4-alpha-glucanotransferase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZHQ3_9ACTN
4-alpha-glucanotransferase {ECO:0000313|EMBL:CDA36074.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
4-alpha-glucanotransferase
L3_122_123G1_scaffold_157_24
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

29403..29639
DNA (237bp) protein (79aa)
Putative regulatory protein (CxxC_CxxC_SSSS) n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6J2_9ACTN
Putative regulatory protein (CxxC_CxxC_SSSS) {ECO:0000313|EMBL:EBA40351.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
FmdB family regulatory protein
L3_122_123G1_scaffold_157_25
unknown

Not on your lists

30041..30226
DNA (186bp) protein (62aa)

This feature has no annotations

L3_122_123G1_scaffold_157_26
unknown

Not on your lists

30491..31030
DNA (540bp) protein (180aa)

This feature has no annotations

L3_122_123G1_scaffold_157_27
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(30864..32264)
DNA (1401bp) protein (467aa)
NusB family protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6J4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73372.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
NusB/RsmB/TIM44
L3_122_123G1_scaffold_157_28
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(32261..33181)
DNA (921bp) protein (307aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6J5_9ACTN
L3_122_123G1_scaffold_157_29
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(33508..34044)
DNA (537bp) protein (179aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6J7_9ACTN
L3_122_123G1_scaffold_157_30
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(34063..36516)
DNA (2454bp) protein (818aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Primosomal protein N n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZHQ8_9ACTN
replication restart DNA helicase PriA
Displaying items 1-30 of 122 in total

View Taxonomy