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L3_122_123G1_scaffold_411

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_123G1_scaffold_411_1
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(1..99)
DNA (99bp) protein (33aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBY4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA38877.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_122_123G1_scaffold_411_2
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(375..1088)
DNA (714bp) protein (238aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBY3_9ACTN
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EBA38876.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
GntR family transcriptional regulator
L3_122_123G1_scaffold_411_3
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1073..1840)
DNA (768bp) protein (256aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBY2_9ACTN
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EBA38875.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
GntR family transcriptional regulator
L3_122_123G1_scaffold_411_4
uncultured Collinsella sp. SMG3, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1876..2367)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=uncultured Collinsella sp. SMG3 RepID=H6WNQ0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:AFA54831.1}; TaxID=1131819 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="uncultured Collinsella sp. SMG3.;"
L3_122_123G1_scaffold_411_5
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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2669..3781
DNA (1113bp) protein (371aa)
Putative uncharacterized protein n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N1Y2_SLAHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV23423.1}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029; / RHS 1) (Peptococcus heliotrinreducens).;"
L3_122_123G1_scaffold_411_6
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3955..6483)
DNA (2529bp) protein (843aa)
Fructose-6-phosphate phosphoketolase (EC:4.1.2.22)
phosphoketolase n=1 Tax=Coriobacteriaceae RepID=UPI00034A9CD2
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase {ECO:0000313|EMBL:CDD84211.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
L3_122_123G1_scaffold_411_7
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6688..7716)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=uncultured Collinsella sp. SMG3 RepID=H6WNQ1_9ACTN
Sugar-binding domain protein {ECO:0000313|EMBL:EBA38873.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
LacI family transcriptional regulator
L3_122_123G1_scaffold_411_8
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

7900..8862
DNA (963bp) protein (321aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBX9_9ACTN
L3_122_123G1_scaffold_411_9
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(9091..10296)
DNA (1206bp) protein (402aa)
Tat pathway signal sequence domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBX8_9ACTN
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EBA38871.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_122_123G1_scaffold_411_10
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

10563..11624
DNA (1062bp) protein (354aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EBA38870.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EBA38870.1};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
UDP-glucose 4-epimerase n=2 Tax=Collinsella RepID=A4EBX7_9ACTN
UDP-glucose 4-epimerase
L3_122_123G1_scaffold_411_11
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

11846..13351
DNA (1506bp) protein (502aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBX5_9ACTN
L3_122_123G1_scaffold_411_12
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

13480..15747
DNA (2268bp) protein (756aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
glycogen/starch/alpha-glucan phosphorylase (EC:2.4.1.1)
Phosphorylase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZHX6_9ACTN
L3_122_123G1_scaffold_411_13
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16284..17483)
DNA (1200bp) protein (400aa)
ABC transporter, ATP-binding protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBX3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73927.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
ABC transporter-like protein
L3_122_123G1_scaffold_411_14
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17552..18391)
DNA (840bp) protein (280aa)
ABC transporter, permease protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBX2_9ACTN
ABC transporter, permease protein {ECO:0000313|EMBL:EBA38865.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
binding-protein-dependent transport system inner membrane protein
L3_122_123G1_scaffold_411_15
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18391..19245)
DNA (855bp) protein (285aa)
ABC transporter, permease protein n=2 Tax=Collinsella RepID=A4EBX1_9ACTN
ABC transporter permease protein {ECO:0000313|EMBL:CDA36177.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
binding-protein-dependent transport system inner membrane protein
L3_122_123G1_scaffold_411_16
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19333..20649)
DNA (1317bp) protein (439aa)
Tat pathway signal sequence domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z913_9ACTN
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:CDA36178.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
family 1 extracellular solute-binding protein
L3_122_123G1_scaffold_411_17
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20956..21675)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZHX9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73931.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
GntR family transcriptional regulator
L3_122_123G1_scaffold_411_18
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21900..24350
DNA (2451bp) protein (817aa)
PTS system maltose-specific EIICB component n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBW5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73932.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
PTS system protein
L3_122_123G1_scaffold_411_19
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

24466..25491
DNA (1026bp) protein (342aa)
geranylgeranyl-diphosphate synthase; farnesyl-diphosphate synthase (EC:2.5.1.29 2.5.1.10)
Polyprenyl synthetase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBW4_9ACTN
Polyprenyl synthetase {ECO:0000313|EMBL:EBA38857.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_122_123G1_scaffold_411_20
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25630..26535
DNA (906bp) protein (302aa)
Putative peptidoglycan binding domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z898_9ACTN
Putative peptidoglycan binding domain protein {ECO:0000313|EMBL:CDA35085.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
peptidoglycan-binding domain 1 protein
L3_122_123G1_scaffold_411_21
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(27525..28436)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBW2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73935.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_122_123G1_scaffold_411_22
unknown

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comp(28930..29421)
DNA (492bp) protein (164aa)

This feature has no annotations

L3_122_123G1_scaffold_411_23
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29903..31792)
DNA (1890bp) protein (630aa)
Carbon starvation protein CstA n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZHV1_9ACTN
Carbon starvation protein CstA {ECO:0000313|EMBL:CDA36139.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
carbon starvation protein CstA
L3_122_123G1_scaffold_411_24
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(32610..34994)
DNA (2385bp) protein (795aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|SAAS:SAAS00182339};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
(50S ribosomal protein S18P)-alanine acetyltransferase (EC:2.3.1.128)
Putative glycoprotease GCP n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBV8_9ACTN
L3_122_123G1_scaffold_411_25
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(34981..35487)
DNA (507bp) protein (169aa)
Hydrolase, P-loop family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBV7_9ACTN
Hydrolase, P-loop family {ECO:0000313|EMBL:EBA38850.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_122_123G1_scaffold_411_26
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(35500..36120)
DNA (621bp) protein (207aa)
Uracil-DNA glycosylase, family 4 {ECO:0000313|EMBL:EBA38849.1}; EC=3.2.2.- {ECO:0000313|EMBL:EBA38849.1};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Uracil-DNA glycosylase, family 4 n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBV6_9ACTN
phage SPO1 DNA polymerase-related protein
L3_122_123G1_scaffold_411_27
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(36129..37274)
DNA (1146bp) protein (382aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBV5_9ACTN
L3_122_123G1_scaffold_411_28
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(37277..37951)
DNA (675bp) protein (225aa)
ADP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; EC=4.2.1.136 {ECO:0000256|HAMAP-Rule:MF_01965};; ADP-dependent NAD(P)HX dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
ADP-dependent (S)-NAD(P)H-hydrate dehydratase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBV4_9ACTN
carbohydrate kinase
L3_122_123G1_scaffold_411_29
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

38199..38771
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBV3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA38846.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_122_123G1_scaffold_411_30
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(38859..39398)
DNA (540bp) protein (180aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071085}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071082};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Holo-[acyl-carrier-protein] synthase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBV2_9ACTN
holo-ACP synthase
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