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L3_122_123G1_scaffold_414

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_123G1_scaffold_414_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..595)
DNA (594bp) protein (198aa)
ATP binding protein of ABC transporter n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G7G7_BIFLO
uup2; uup2
ABC transporter ATP-binding component {ECO:0000313|EMBL:BAJ70451.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_122_123G1_scaffold_414_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(643..1392)
DNA (750bp) protein (250aa)
Possible amidotransferase n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G7G6_BIFLO
amidotransferase
Possible amidotransferase {ECO:0000313|EMBL:AAN24140.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_122_123G1_scaffold_414_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1491..3140
DNA (1650bp) protein (550aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Cysteine--tRNA ligase n=13 Tax=Bifidobacterium RepID=B3DTM5_BIFLD
cysteinyl-tRNA synthetase
L3_122_123G1_scaffold_414_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3159..4067)
DNA (909bp) protein (303aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=Q8G7G4_BIFLO
Co/Zn/Cd cation transport protein
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EEI81764.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_122_123G1_scaffold_414_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


4276..6024
DNA (1749bp) protein (583aa)
Signal recognition particle protein n=3 Tax=Bifidobacterium longum RepID=Q8G7G3_BIFLO
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
ffh; signal recognition particle protein
L3_122_123G1_scaffold_414_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6101..7210
DNA (1110bp) protein (370aa)
Metal-dependent hydrolase n=11 Tax=Bacteria RepID=B3DTM8_BIFLD
hypothetical protein
Metal-dependent hydrolase {ECO:0000313|EMBL:ACD98497.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_122_123G1_scaffold_414_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


7443..7904
DNA (462bp) protein (154aa)
30S ribosomal protein S16 n=15 Tax=Bifidobacterium RepID=RS16_BIFLO
rpsP; rpsp
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_122_123G1_scaffold_414_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7925..8158
DNA (234bp) protein (78aa)
UPF0109 protein BLD_1053 n=22 Tax=Bifidobacterium RepID=B3DTN0_BIFLD
Predicted RNA-binding protein (contains KH domain)
UPF0109 protein BL0306 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_122_123G1_scaffold_414_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8181..8804
DNA (624bp) protein (208aa)
Ribosome maturation factor RimM n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B217_BIFLN
ribosome maturation protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_122_123G1_scaffold_414_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8929..9981)
DNA (1053bp) protein (351aa)
Inosine-uridine preferring nucleoside hydrolase n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G7F8_BIFLO
inosine-uridine nucleoside N-ribohydrolase
Inosine-uridine nucleoside N-ribohydrolase {ECO:0000313|EMBL:AIW43323.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_122_123G1_scaffold_414_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10079..10942)
DNA (864bp) protein (288aa)
Tas4 n=13 Tax=Bifidobacterium RepID=E4R0B8_BIFLM
oxidoreductase
Aldo/keto reductase {ECO:0000313|EMBL:KEY23454.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_122_123G1_scaffold_414_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11008..13278)
DNA (2271bp) protein (757aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8AT85_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:AEI98161.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
hypothetical protein
L3_122_123G1_scaffold_414_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13342..13920)
DNA (579bp) protein (193aa)
Uncharacterized protein n=9 Tax=Bifidobacterium RepID=B3DTP5_BIFLD
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KEY31713.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_122_123G1_scaffold_414_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14217..14996)
DNA (780bp) protein (260aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Phosphate import ATP-binding protein PstB n=8 Tax=Bifidobacterium RepID=PSTB_BIFLO
phosphate ABC transporter ATPase subunit
L3_122_123G1_scaffold_414_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15049..16047)
DNA (999bp) protein (333aa)
ABC-type phosphate transport system permease component n=4 Tax=Bifidobacterium longum RepID=B3DTP7_BIFLD
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
Phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1) {ECO:0000313|EMBL:CBK71028.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_122_123G1_scaffold_414_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16047..17000)
DNA (954bp) protein (318aa)
ABC-type phosphate transport system permease component n=13 Tax=Bifidobacterium RepID=B3DTP8_BIFLD
phosphate ABC transporter permease
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:EIJ22271.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_122_123G1_scaffold_414_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17211..18344)
DNA (1134bp) protein (378aa)
Phosphate-binding protein PstS n=13 Tax=Bacteria RepID=D6DA26_BIFLN
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_122_123G1_scaffold_414_18
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18594..19364)
DNA (771bp) protein (257aa)
Response regulator of two-component system n=2 Tax=Bifidobacterium longum RepID=Q8G7F0_BIFLO
Response regulator receiver domain-containing protein {ECO:0000313|EMBL:EFV37947.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
response regulator of two-component system
L3_122_123G1_scaffold_414_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19497..20828)
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
His Kinase A (Phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase n=14 Tax=Bacteria RepID=D6DA28_BIFLN
two-component sensor kinase
L3_122_123G1_scaffold_414_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21079..21792)
DNA (714bp) protein (238aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Methylthioadenosine nucleosidase n=14 Tax=Bifidobacterium RepID=D6DA30_BIFLN
nucleosidase
L3_122_123G1_scaffold_414_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21914..23146)
DNA (1233bp) protein (411aa)
3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase n=14 Tax=Bifidobacterium RepID=B3DTQ4_BIFLD
phospho-2-dehydro-3-deoxyheptonate aldolase
3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase {ECO:0000313|EMBL:ACD98523.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_122_123G1_scaffold_414_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23275..24408)
DNA (1134bp) protein (378aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361, ECO:0000313|EMBL:CBK71035.1};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=16 Tax=Bifidobacterium RepID=B3DTQ5_BIFLD
phospho-2-dehydro-3-deoxyheptonate aldolase
L3_122_123G1_scaffold_414_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24700..26043)
DNA (1344bp) protein (448aa)
Aminopeptidase {ECO:0000313|EMBL:ESV32904.1}; EC=3.4.22.40 {ECO:0000313|EMBL:ESV32904.1};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
Aminopeptidase C n=9 Tax=Bifidobacterium longum RepID=D6DA33_BIFLN
aminopeptidase
L3_122_123G1_scaffold_414_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26158..27735)
DNA (1578bp) protein (526aa)
Uncharacterized protein n=4 Tax=Bifidobacterium longum subsp. longum RepID=I3B1Y8_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ32618.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_122_123G1_scaffold_414_25
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27883..28560)
DNA (678bp) protein (226aa)
Pyrrolidone-carboxylate peptidase n=4 Tax=Bifidobacterium RepID=B3DTQ8_BIFLD
pcp; pcp
Pyroglutamyl-peptidase I {ECO:0000313|EMBL:EFV37940.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L3_122_123G1_scaffold_414_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28570..29445)
DNA (876bp) protein (292aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=3 Tax=Bifidobacterium RepID=ISPD_BIFLO
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
L3_122_123G1_scaffold_414_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29525..30505)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G7E1_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN24165.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_122_123G1_scaffold_414_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30583..32229)
DNA (1647bp) protein (549aa)
Possible protease or peptidase n=10 Tax=Bifidobacterium RepID=Q8G7E0_BIFLO
protease or peptidase
Collagenase {ECO:0000313|EMBL:KEY23471.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_122_123G1_scaffold_414_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32303..33118
DNA (816bp) protein (272aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
tRNA (guanine-N(1)-)-methyltransferase n=14 Tax=Bifidobacterium RepID=TRMD_BIFLO
trmD; trmd
L3_122_123G1_scaffold_414_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33142..33753)
DNA (612bp) protein (204aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=Q8G7D9_BIFLO
n6-adenine-specific methylase
RNA methyltransferase {ECO:0000313|EMBL:KEY23473.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Displaying items 1-30 of 33 in total

View Taxonomy