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L3_122_123G1_scaffold_448

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_123G1_scaffold_448_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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128..598
DNA (471bp) protein (157aa)
Prepilin peptidase-dependent protein A n=88 Tax=Escherichia coli RepID=B7N758_ECOLU
ppdA; prepilin peptidase-dependent protein A
Prepilin-type cleavage/methylation protein {ECO:0000313|EMBL:ESA84872.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L3_122_123G1_scaffold_448_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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589..1152
DNA (564bp) protein (188aa)
Prepilin peptidase-dependent protein B n=100 Tax=Enterobacteriaceae RepID=B7N757_ECOLU
ppdB; hypothetical protein
Prepilin peptidase-dependent protein B {ECO:0000313|EMBL:CAR14318.1}; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
L3_122_123G1_scaffold_448_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1149..1556
DNA (408bp) protein (136aa)
Uncharacterized protein n=210 Tax=Escherichia RepID=B7MLH0_ECO45
ygdB; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQY83081.1}; TaxID=1281237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3304-1.;"
L3_122_123G1_scaffold_448_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1541..1864
DNA (324bp) protein (108aa)
Prepilin peptidase-dependent protein C n=307 Tax=Enterobacteriaceae RepID=PPDC_ECOLI
prepilin peptidase-dependent protein C
Prepilin-type cleavage/methylation protein {ECO:0000313|EMBL:ESE04948.1}; TaxID=1269003 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908658.;"
L3_122_123G1_scaffold_448_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1877..5245
DNA (3369bp) protein (1123aa)
recC; exonuclease V subunit gamma (EC:3.1.11.5)
RecBCD enzyme subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01486};; Exonuclease V subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; Helicase/nuclease RecBCD subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
Exonuclease V (RecBCD complex), gamma chain n=69 Tax=Escherichia coli RepID=B7N754_ECOLU
L3_122_123G1_scaffold_448_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5421..8309
DNA (2889bp) protein (963aa)
ptr; protease III (EC:3.4.24.55)
Protease III {ECO:0000313|EMBL:CAR14314.1}; EC=3.4.24.55 {ECO:0000313|EMBL:CAR14314.1};; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
Protease III n=76 Tax=Escherichia coli RepID=B7N753_ECOLU
L3_122_123G1_scaffold_448_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8302..11844
DNA (3543bp) protein (1181aa)
recB; exodeoxyribonuclease V beta subunit (EC:3.1.11.5)
RecBCD enzyme subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01485, ECO:0000313|EMBL:CBG35844.1};; Exonuclease V subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; Helicase/nuclease RecBCD subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; TaxID=216592 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O44:H18 (strain 042 / EAEC).;"
Exonuclease V (RecBCD complex), beta subunit n=82 Tax=Escherichia coli RepID=B7N752_ECOLU
L3_122_123G1_scaffold_448_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11844..13670
DNA (1827bp) protein (609aa)
recD; exonuclease V subunit alpha (EC:3.1.11.5)
RecBCD enzyme subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01487};; Exonuclease V subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; Helicase/nuclease RecBCD subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
Exonuclease V (RecBCD complex), alpha chain n=75 Tax=Escherichia coli RepID=B7N751_ECOLU
L3_122_123G1_scaffold_448_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13732..15063)
DNA (1332bp) protein (444aa)
N-acetylglutamate synthase (EC:2.3.1.1)
Amino-acid acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01105}; EC=2.3.1.1 {ECO:0000256|HAMAP-Rule:MF_01105};; N-acetylglutamate synthase {ECO:0000256|HAMAP-Rule:MF_01105}; TaxID=1432548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS25.;"
Amino-acid acetyltransferase n=925 Tax=Enterobacteriaceae RepID=ARGA_ECO57
L3_122_123G1_scaffold_448_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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15295..16548
DNA (1254bp) protein (418aa)
N-acetylmuramoyl-L-alanine amidase AmiC {ECO:0000313|EMBL:EYE01304.1}; EC=3.5.1.28 {ECO:0000313|EMBL:EYE01304.1};; TaxID=1444215 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-110-08_S4_C1.;"
N-acetylmuramoyl-L-alanine amidase AmiC n=1 Tax=Escherichia coli TA280 RepID=F4V5F0_ECOLX
amiC; N-acetylmuramoyl-L-alanine amidase
L3_122_123G1_scaffold_448_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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16952..18049
DNA (1098bp) protein (366aa)
Membrane-bound lytic murein transglycosylase A n=1 Tax=Escherichia coli MS 21-1 RepID=D8A453_ECOLX
mltA; murein transglycosylase A
Membrane-bound lytic murein transglycosylase A {ECO:0000313|EMBL:EHP66472.1}; TaxID=1127356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4_1_47FAA.;"
L3_122_123G1_scaffold_448_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18288..19094
DNA (807bp) protein (269aa)
Uncharacterized protein n=86 Tax=Escherichia coli RepID=B7N747_ECOLU
ygdL; hypothetical protein
ThiF family protein {ECO:0000313|EMBL:EFJ74052.1}; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
L3_122_123G1_scaffold_448_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19145..19588)
DNA (444bp) protein (148aa)
SufE-like protein ygdK n=99 Tax=Escherichia coli RepID=D6IUE9_ECOLX
ygdK; putative Fe-S metabolism protein (sufE-like)
Cysteine desulfurase, sulfur acceptor subunit CsdE {ECO:0000313|EMBL:ESD80383.1}; TaxID=1268998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908573.;"
L3_122_123G1_scaffold_448_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19588..20793)
DNA (1206bp) protein (402aa)
Cysteine desulfurase, catalytic subunit CsdA {ECO:0000313|EMBL:EFJ74054.1}; EC=2.8.1.7 {ECO:0000313|EMBL:EFJ74054.1};; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
Cysteine sulfinate desulfinase n=73 Tax=Escherichia coli RepID=B7N745_ECOLU
csdA; cysteine sulfinate desulfinase
L3_122_123G1_scaffold_448_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20985..21212
DNA (228bp) protein (76aa)
Uncharacterized protein n=116 Tax=Enterobacteriaceae RepID=D2NLW6_ECOS5
ygdI; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMX83064.1}; TaxID=1116119 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2719100.;"
L3_122_123G1_scaffold_448_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21564..22481
DNA (918bp) protein (306aa)
Glycine cleavage system transcriptional activator n=1321 Tax=Enterobacteriaceae RepID=GCVA_ECO57
gcvA; positive regulator of gcv operon
LysR family transcriptional regulator {ECO:0000313|EMBL:EFE61653.2}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
L3_122_123G1_scaffold_448_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22500..22895
DNA (396bp) protein (132aa)
UPF0382 inner membrane protein YgdD n=1299 Tax=Enterobacteriaceae RepID=YGDD_ECO57
ygdD; hypothetical protein
Conserved predicted inner membrane protein {ECO:0000313|EMBL:CAS10622.1}; TaxID=574521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O127:H6 (strain E2348/69 / EPEC).;"
L3_122_123G1_scaffold_448_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22888..23988
DNA (1101bp) protein (367aa)
Ribosomal RNA large subunit methyltransferase M {ECO:0000256|HAMAP-Rule:MF_01551, ECO:0000256|SAAS:SAAS00058276}; EC=2.1.1.186 {ECO:0000256|HAMAP-Rule:MF_01551, ECO:0000256|SAAS:SAAS00058274};; 23S rRNA (cytidine2498-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01551}; 23S rRNA 2'-O-ribose methyltransferase RlmM {ECO:0000256|HAMAP-Rule:MF_01551}; TaxID=656393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H299.;"
Ribosomal RNA large subunit methyltransferase M n=818 Tax=Enterobacteriaceae RepID=RLMM_ECO24
ygdE; putative RNA 2'-O-ribose methyltransferase
L3_122_123G1_scaffold_448_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24032..24763)
DNA (732bp) protein (244aa)
L-fucose operon activator n=767 Tax=Enterobacteriaceae RepID=FUCR_ECOLI
L-fucose operon activator
Sugar-specific transcriptional regulator, TrmB family {ECO:0000313|EMBL:EII24774.1}; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
L3_122_123G1_scaffold_448_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24821..25243)
DNA (423bp) protein (141aa)
L-fucose mutarotase {ECO:0000256|HAMAP-Rule:MF_01662, ECO:0000256|SAAS:SAAS00010479}; EC=5.1.3.29 {ECO:0000256|HAMAP-Rule:MF_01662, ECO:0000256|SAAS:SAAS00148242};; Fucose 1-epimerase {ECO:0000256|HAMAP-Rule:MF_01662}; Type-2 mutarotase {ECO:0000256|HAMAP-Rule:MF_01662}; TaxID=869687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0967.;"
L-fucose mutarotase n=1387 Tax=Enterobacteriaceae RepID=FUCM_ECO24
fucU; fucose operon protein FucU
L3_122_123G1_scaffold_448_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25245..26663)
DNA (1419bp) protein (473aa)
fucK; L-fuculokinase (EC:2.7.1.51)
L-fuculokinase {ECO:0000256|HAMAP-Rule:MF_00986, ECO:0000313|EMBL:CAR14298.1}; EC=2.7.1.51 {ECO:0000256|HAMAP-Rule:MF_00986, ECO:0000313|EMBL:CAR14298.1};; L-fuculose kinase {ECO:0000256|HAMAP-Rule:MF_00986}; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
L-fuculokinase n=75 Tax=Escherichia coli RepID=B7N737_ECOLU
L3_122_123G1_scaffold_448_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26772..28547)
DNA (1776bp) protein (592aa)
fucI; L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase {ECO:0000255|HAMAP-Rule:MF_01254}; EC=5.3.1.25 {ECO:0000255|HAMAP-Rule:MF_01254};; 6-deoxy-L-galactose isomerase {ECO:0000255|HAMAP-Rule:MF_01254}; FucIase; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
L-fucose isomerase n=87 Tax=Escherichia coli RepID=FUCI_ECOLU
L3_122_123G1_scaffold_448_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(28580..29896)
DNA (1317bp) protein (439aa)
L-fucose-proton symporter n=585 Tax=Enterobacteriaceae RepID=FUCP_ECOLI
L-fucose transporter
H+ symporter permease {ECO:0000313|EMBL:KDX20892.1}; TaxID=1444180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-210-07_S3_C3.;"
L3_122_123G1_scaffold_448_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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30443..31090
DNA (648bp) protein (216aa)
L-fuculose phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00987}; EC=4.1.2.17 {ECO:0000256|HAMAP-Rule:MF_00987};; L-fuculose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00987}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L-fuculose phosphate aldolase n=13 Tax=Escherichia coli RepID=L2U4J4_ECOLX
L-fuculose phosphate aldolase
L3_122_123G1_scaffold_448_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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31118..32266
DNA (1149bp) protein (383aa)
fucO; L-1,2-propanediol oxidoreductase (EC:1.1.1.77)
Lactaldehyde reductase {ECO:0000313|EMBL:EFU36629.1}; EC=1.1.1.77 {ECO:0000313|EMBL:EFU36629.1};; TaxID=679202 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 85-1.;"
Lactaldehyde reductase n=852 Tax=Enterobacteriaceae RepID=FUCO_ECO57
L3_122_123G1_scaffold_448_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(32371..33216)
DNA (846bp) protein (282aa)
Flap endonuclease Xni {ECO:0000256|HAMAP-Rule:MF_01192, ECO:0000256|SAAS:SAAS00008260}; Short=FEN {ECO:0000256|HAMAP-Rule:MF_01192};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01192, ECO:0000256|SAAS:SAAS00273675};; TaxID=1169339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE20.;"
Flap endonuclease Xni n=83 Tax=Escherichia coli RepID=L2U4L6_ECOLX
xni; exonuclease IX
L3_122_123G1_scaffold_448_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(33237..34604)
DNA (1368bp) protein (456aa)
L-serine ammonia-lyase {ECO:0000313|EMBL:EII24605.1}; EC=4.3.1.17 {ECO:0000313|EMBL:EII24605.1};; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
L-serine dehydratase 2 n=573 Tax=Enterobacteriaceae RepID=E2QQP3_ECOLX
sdaB; L-serine deaminase II
L3_122_123G1_scaffold_448_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34662..35951)
DNA (1290bp) protein (430aa)
Serine transporter n=958 Tax=Bacteria RepID=SDAC_ECO57
serine transporter
Serine transporter {ECO:0000313|EMBL:EIH12949.1}; TaxID=869672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 97.0259.;"
L3_122_123G1_scaffold_448_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36508..37872)
DNA (1365bp) protein (455aa)
LOG family protein YgdH n=1259 Tax=Enterobacteriaceae RepID=YGDH_ECO57
ygdH; rossmann fold nucleotide-binding protein
Putative nucleotide binding protein {ECO:0000313|EMBL:EGI44926.1}; TaxID=656408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H591.;"
L3_122_123G1_scaffold_448_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37984..38832)
DNA (849bp) protein (283aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000255|HAMAP-Rule:MF_00817}; EC=1.7.1.13 {ECO:0000255|HAMAP-Rule:MF_00817};; 7-cyano-7-carbaguanine reductase {ECO:0000255|HAMAP-Rule:MF_00817}; NADPH-dependent nitrile oxidoreductase {ECO:0000255|HAMAP-Rule:MF_00817}; PreQ(0) reductase {ECO:0000255|HAMAP-Rule:MF_00817}; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
NADPH-dependent 7-cyano-7-deazaguanine reductase n=75 Tax=Escherichia coli RepID=QUEF_ECOLU
queF; 7-cyano-7-deazaguanine reductase
Displaying items 1-30 of 44 in total

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