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L3_122_242G1_scaffold_7

Search features with annotation key words

Displaying items 1-30 of 191 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_242G1_scaffold_7_1
Melissococcus plutonius, Melissococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(268..1680)
DNA (1413bp) protein (471aa)
Sugar (Glycoside-pentoside-hexuronide) transporter n=2 Tax=Melissococcus plutonius RepID=H5T6U7_MELPD
sugar (glycoside-pentoside-hexuronide) transporter
Sugar (Glycoside-pentoside-hexuronide) transporter {ECO:0000313|EMBL:BAL62890.1}; TaxID=1090974 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Melissococcus.;" source="Melissococcus plutonius (strain DAT561).;"
L3_122_242G1_scaffold_7_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1709..3124)
DNA (1416bp) protein (472aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Uronate isomerase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBJ1_9FIRM
glucuronate isomerase
L3_122_242G1_scaffold_7_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3357..4847
DNA (1491bp) protein (497aa)
altronate dehydratase (EC:4.2.1.7)
SAF domain protein n=3 Tax=Lachnospiraceae RepID=A7AYR8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20655.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_122_242G1_scaffold_7_4
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4888..6399
DNA (1512bp) protein (504aa)
Mannitol dehydrogenase domain protein n=2 Tax=Lachnospiraceae RepID=A7AYR9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48751.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
mannitol dehydrogenase domain-containing protein
L3_122_242G1_scaffold_7_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6459..8273)
DNA (1815bp) protein (605aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Elongation factor 4 n=2 Tax=Lachnospiraceae RepID=F7JT02_9FIRM
GTP-binding protein LepA
L3_122_242G1_scaffold_7_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8389..9402)
DNA (1014bp) protein (338aa)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EDN79235.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EDN79235.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III, delta subunit n=3 Tax=Lachnospiraceae RepID=A7AYS1_RUMGN
L3_122_242G1_scaffold_7_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9390..11669)
DNA (2280bp) protein (760aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BZW1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20659.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
DNA internalization-related competence protein ComEC/Rec2
L3_122_242G1_scaffold_7_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11672..12601)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66343.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Spore germination protein
L3_122_242G1_scaffold_7_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12612..14003)
DNA (1392bp) protein (464aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Signal transduction histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TST8_9FIRM
L3_122_242G1_scaffold_7_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14041..14733)
DNA (693bp) protein (231aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5TKW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66345.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_122_242G1_scaffold_7_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14756..15391)
DNA (636bp) protein (212aa)
ComE operon protein 1 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5E3_9FIRM
ComE operon protein 1 {ECO:0000313|EMBL:CCZ66346.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
competence protein ComEA helix-hairpin-helix repeat region
L3_122_242G1_scaffold_7_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15519..15950)
DNA (432bp) protein (144aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B492_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48760.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_122_242G1_scaffold_7_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16018..17202)
DNA (1185bp) protein (395aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
acetylornithine and succinylornithine aminotransferases (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B493_RUMGN
L3_122_242G1_scaffold_7_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17192..18091)
DNA (900bp) protein (300aa)
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=3 Tax=Lachnospiraceae RepID=A7B494_RUMGN
L3_122_242G1_scaffold_7_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18136..19359)
DNA (1224bp) protein (408aa)
glutamate N-acetyltransferase/amino-acid acetyltransferase (EC:2.3.1.35 2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ n=3 Tax=Lachnospiraceae RepID=F7JT13_9FIRM
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_122_242G1_scaffold_7_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19377..19823)
DNA (447bp) protein (149aa)
N-acetylglutamate synthase (EC:2.3.1.1)
Acetyltransferase, GNAT family n=3 Tax=Lachnospiraceae RepID=A7B497_RUMGN
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EDN77174.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_122_242G1_scaffold_7_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19849..20889)
DNA (1041bp) protein (347aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
N-acetyl-gamma-glutamyl-phosphate reductase, common form (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=4 Tax=Clostridiales RepID=A7B498_RUMGN
L3_122_242G1_scaffold_7_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21039..22289)
DNA (1251bp) protein (417aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
glutamate-5-semialdehyde dehydrogenase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=3 Tax=Lachnospiraceae RepID=A7B499_RUMGN
L3_122_242G1_scaffold_7_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22313..23200)
DNA (888bp) protein (296aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=4 Tax=Clostridiales RepID=A7B4A0_RUMGN
L3_122_242G1_scaffold_7_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23235..23750)
DNA (516bp) protein (172aa)
Isochorismatase family protein {ECO:0000313|EMBL:EDN77178.1}; EC=3.-.-.- {ECO:0000313|EMBL:EDN77178.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Isochorismatase family protein n=3 Tax=Clostridiales RepID=A7B4A1_RUMGN
Amidases related to nicotinamidase
L3_122_242G1_scaffold_7_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24028..25248
DNA (1221bp) protein (407aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5F2_9FIRM
L3_122_242G1_scaffold_7_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25317..26579)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BZX5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20674.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
uracil-xanthine permease
L3_122_242G1_scaffold_7_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26675..27616)
DNA (942bp) protein (314aa)
membrane dipeptidase (EC:3.4.13.19)
Renal dipeptidase family protein n=3 Tax=Lachnospiraceae RepID=A7B4A6_RUMGN
Renal dipeptidase family protein {ECO:0000313|EMBL:EDN77183.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_122_242G1_scaffold_7_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27710..28435
DNA (726bp) protein (242aa)
Peptidase C26 n=3 Tax=Lachnospiraceae RepID=A7B4A7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20676.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Predicted glutamine amidotransferases
L3_122_242G1_scaffold_7_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28469..29770)
DNA (1302bp) protein (434aa)
PDZ/DHR/GLGF domain protein n=2 Tax=Clostridiales RepID=A7B7E4_RUMGN
PDZ/DHR/GLGF domain protein {ECO:0000313|EMBL:CCZ66360.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L3_122_242G1_scaffold_7_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29871..31697)
DNA (1827bp) protein (609aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7E5_RUMGN
L3_122_242G1_scaffold_7_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31790..33334)
DNA (1545bp) protein (515aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B7E6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48799.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_122_242G1_scaffold_7_28
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33395..34984)
DNA (1590bp) protein (530aa)
Cell envelope-like function transcriptional attenuator common domain protein n=3 Tax=Lachnospiraceae RepID=A7B7E7_RUMGN
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EDN75890.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_122_242G1_scaffold_7_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35057..35983)
DNA (927bp) protein (309aa)
Glycosyltransferase, group 2 family protein n=4 Tax=Clostridiales RepID=A7B7E8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48801.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Glycosyltransferases, probably involved in cell wall biogenesis
L3_122_242G1_scaffold_7_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35970..37301)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B7E9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48802.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
Displaying items 1-30 of 191 in total

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