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L3_123_000G1_scaffold_37

Search features with annotation key words

Displaying items 1-30 of 202 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_123_000G1_scaffold_37_1
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(498..2348)
DNA (1851bp) protein (617aa)
ABC transporter, solute-binding protein n=4 Tax=Erysipelotrichaceae RepID=B0N2Z9_9FIRM
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EDS19426.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
ABC-type spermidine/putrescine transport system, permease component II
L3_123_000G1_scaffold_37_2
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2326..3183)
DNA (858bp) protein (286aa)
ABC transporter, permease protein n=5 Tax=Erysipelotrichaceae RepID=B0N2Z8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ48243.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
ABC-type spermidine/putrescine transport system, permease component I
L3_123_000G1_scaffold_37_3
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3183..4226)
DNA (1044bp) protein (348aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
spermidine/putrescine ABC transporter ATP-binding subunit (EC:3.6.3.31)
Polyamine ABC transporter, ATP-binding protein n=4 Tax=Erysipelotrichaceae RepID=B0N2Z7_9FIRM
L3_123_000G1_scaffold_37_4
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4237..4770)
DNA (534bp) protein (178aa)
Cupin domain protein n=5 Tax=Erysipelotrichaceae RepID=B0N2Z6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ31526.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
XRE family transcriptional regulator
L3_123_000G1_scaffold_37_5
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4900..5730)
DNA (831bp) protein (277aa)
Prephenate dehydrogenase {ECO:0000313|EMBL:EDS19422.1}; EC=1.3.1.12 {ECO:0000313|EMBL:EDS19422.1};; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
tyrA; prephenate dehydrogenase TyrA (EC:1.3.1.12)
Prephenate dehydrogenase n=2 Tax=Erysipelotrichaceae RepID=B0N2Z5_9FIRM
L3_123_000G1_scaffold_37_6
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5829..6212)
DNA (384bp) protein (128aa)
Uncharacterized protein n=5 Tax=Erysipelotrichaceae RepID=B0N2Z4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM91972.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
L3_123_000G1_scaffold_37_7
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(6230..7690)
DNA (1461bp) protein (487aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
Nicotinate phosphoribosyltransferase n=5 Tax=Erysipelotrichaceae RepID=B0N2Z3_9FIRM
nicotinate phosphoribosyltransferase
L3_123_000G1_scaffold_37_8
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7756..8076)
DNA (321bp) protein (107aa)
LysM domain protein n=4 Tax=Erysipelotrichaceae RepID=B0N2Z2_9FIRM
LysM domain protein {ECO:0000313|EMBL:EDS19419.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
hypothetical protein
L3_123_000G1_scaffold_37_9
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8137..8817)
DNA (681bp) protein (227aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
Ribonuclease 3 n=4 Tax=Erysipelotrichaceae RepID=B0N2Z1_9FIRM
rncS; ribonuclease III
L3_123_000G1_scaffold_37_10
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8819..9793)
DNA (975bp) protein (325aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
Phosphate acyltransferase n=5 Tax=Erysipelotrichaceae RepID=B0N2Z0_9FIRM
plsX; fatty acid/phospholipid synthesis protein PlsX
L3_123_000G1_scaffold_37_11
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9831..11849)
DNA (2019bp) protein (673aa)
ATP-dependent DNA helicase RecG n=1 Tax=Coprobacillus sp. 8_2_54BFAA RepID=H1AGV2_9FIRM
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EHQ48234.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
ATP-dependent DNA helicase RecG
L3_123_000G1_scaffold_37_12
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(11897..12808)
DNA (912bp) protein (304aa)
Transporter, auxin efflux carrier (AEC) family protein n=5 Tax=Erysipelotrichaceae RepID=B0N2Y8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ31519.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
putative permease
L3_123_000G1_scaffold_37_13
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(12911..13243)
DNA (333bp) protein (111aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=4 Tax=Erysipelotrichaceae RepID=B0N2Y7_9FIRM
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EDS19414.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
PTS system beta-glucoside-specific, IIB component
L3_123_000G1_scaffold_37_14
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13367..14197)
DNA (831bp) protein (277aa)
PRD domain protein n=2 Tax=Erysipelotrichaceae RepID=B0N2Y6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM91964.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
transcriptional antiterminator BglG
L3_123_000G1_scaffold_37_15
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14487..14717)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N2Y5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS19412.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
L3_123_000G1_scaffold_37_16
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14960..15265)
DNA (306bp) protein (102aa)
ptsG; putative PTS system glucose-specific EIICBA component (EC:2.7.1.69)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 3_3_56FAA RepID=G9R1C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM91963.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
L3_123_000G1_scaffold_37_17
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15510..15713)
DNA (204bp) protein (68aa)
Uncharacterized protein n=4 Tax=Erysipelotrichaceae RepID=B0N2Y2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ35471.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
PTS system IIA component, Glc family (TC 4.A.1)/PTS system IIB component, Glc family (TC 4.A.1)/PTS system IIC component, Glc family (TC 4.A.1)
L3_123_000G1_scaffold_37_18
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16045..18786)
DNA (2742bp) protein (914aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 8_2_54BFAA RepID=H1AGU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ48228.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
hypothetical protein
L3_123_000G1_scaffold_37_19
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19013..19702)
DNA (690bp) protein (230aa)
Uncharacterized protein n=5 Tax=Erysipelotrichaceae RepID=B0N2X8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ32975.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
hypothetical protein
L3_123_000G1_scaffold_37_20
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19819..20925)
DNA (1107bp) protein (369aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase n=4 Tax=Erysipelotrichaceae RepID=B0N2X7_9FIRM
L3_123_000G1_scaffold_37_21
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21107..21991)
DNA (885bp) protein (295aa)
Transcriptional regulator, LysR family n=4 Tax=Erysipelotrichaceae RepID=B0N2X6_9FIRM
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EDS19403.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
transcriptional regulator
L3_123_000G1_scaffold_37_22
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22136..23461)
DNA (1326bp) protein (442aa)
MATE efflux family protein n=4 Tax=Erysipelotrichaceae RepID=B0N2X5_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EHQ48224.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
mate efflux family protein
L3_123_000G1_scaffold_37_23
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23795..24724
DNA (930bp) protein (310aa)
Site-specific recombinase, phage integrase family n=5 Tax=Erysipelotrichaceae RepID=B0N2X4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ48223.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
Site-specific recombinase XerD
L3_123_000G1_scaffold_37_24
unknown

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comp(26291..26449)
DNA (159bp) protein (53aa)

This feature has no annotations

L3_123_000G1_scaffold_37_25
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26492..27076)
DNA (585bp) protein (195aa)
Integrase core domain protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C0N8_9FIRM
Integrase core domain protein {ECO:0000313|EMBL:EDS75373.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
transposase B of IS655
L3_123_000G1_scaffold_37_26
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27322..27492)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Bacillus cereus MSX-D12 RepID=J8G1M3_BACCE
Transposase {ECO:0000313|EMBL:EYE87129.1}; Flags: Fragment;; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
transposase (05)
L3_123_000G1_scaffold_37_27
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27728..28111)
DNA (384bp) protein (128aa)
Two-component response regulator n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYF3_ROSHA
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:AEN97903.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_123_000G1_scaffold_37_28
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28147..28548)
DNA (402bp) protein (134aa)
Cupin domain protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KJK7_9CLOT
Cupin domain protein {ECO:0000313|EMBL:CCY66995.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
cupin
L3_123_000G1_scaffold_37_29
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28613..29458)
DNA (846bp) protein (282aa)
Putative oxidoreductase n=1 Tax=Clostridium sp. CAG:306 RepID=R6Q889_9CLOT
Putative oxidoreductase {ECO:0000313|EMBL:CDC18147.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
aldo/keto reductase
L3_123_000G1_scaffold_37_30
unknown

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comp(29484..29627)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying items 1-30 of 202 in total

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