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L3_123_000G1_scaffold_246

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_123_000G1_scaffold_246_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..682)
DNA (681bp) protein (227aa)
UPF0348 protein HMPREF1092_00987 n=1 Tax=Clostridium colicanis 209318 RepID=N9XPX4_9CLOT
UPF0348 protein UC77_10320 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
HIGH Nucleotidyl Transferase family protein
L3_123_000G1_scaffold_246_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

897..1898
DNA (1002bp) protein (334aa)
pta; phosphate acetyltransferase (EC:2.3.1.8)
Phosphate acetyltransferase {ECO:0000313|EMBL:AIY84987.1}; EC=2.3.1.8 {ECO:0000313|EMBL:AIY84987.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Phosphate acetyltransferase n=1 Tax=Clostridium colicanis 209318 RepID=N9Y0U5_9CLOT
L3_123_000G1_scaffold_246_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1926..3122
DNA (1197bp) protein (399aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
ackA; acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EZ39_9CLOT
L3_123_000G1_scaffold_246_4
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3220..3729
DNA (510bp) protein (170aa)
Putative metal-binding protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TPN0_9CLOT
Putative metal-binding protein {ECO:0000313|EMBL:EKQ53985.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_123_000G1_scaffold_246_5
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3732..3914
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1R7_9CLOT
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
rpmF; ribosomal protein L32
L3_123_000G1_scaffold_246_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3970..4968
DNA (999bp) protein (333aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Phosphate acyltransferase n=4 Tax=Clostridium butyricum RepID=B1QU29_CLOBU
plsX; fatty acid/phospholipid synthesis protein PlsX
L3_123_000G1_scaffold_246_7
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5053..5283
DNA (231bp) protein (77aa)
Acyl carrier protein n=4 Tax=Clostridium RepID=A6LSM1_CLOB8
acpP; acyl carrier protein AcpP
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
L3_123_000G1_scaffold_246_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5382..6080
DNA (699bp) protein (233aa)
rnc; ribonuclease 3 (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
UPI0003D689CA related cluster n=1 Tax=unknown RepID=UPI0003D689CA
L3_123_000G1_scaffold_246_9
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6073..7071
DNA (999bp) protein (333aa)
radical SAM protein n=1 Tax=Clostridium beijerinckii RepID=UPI00030026B5
Radical SAM domain-containing protein {ECO:0000313|EMBL:AJG97909.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
radical SAM domain-containing protein
L3_123_000G1_scaffold_246_10
unknown

Not on your lists

7196..7291
DNA (96bp) protein (32aa)

This feature has no annotations

L3_123_000G1_scaffold_246_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7307..10861
DNA (3555bp) protein (1185aa)
Chromosome partition protein Smc n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRZ4_CLOSA
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
smc; chromosome partition protein Smc
L3_123_000G1_scaffold_246_12
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10879..11790
DNA (912bp) protein (304aa)
Signal recognition particle receptor FtsY n=1 Tax=Clostridium colicanis 209318 RepID=N9Y0V3_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
ftsY; signal recognition particle-docking protein FtsY
L3_123_000G1_scaffold_246_13
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11872..12201
DNA (330bp) protein (110aa)
UPF0122 protein CCH01_008870 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EQU2_9CLOT
UPF0122 protein CCH01_008870 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
L3_123_000G1_scaffold_246_14
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


12221..13576
DNA (1356bp) protein (452aa)
Signal recognition particle protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WFC7_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
ffh; signal recognition particle protein
L3_123_000G1_scaffold_246_15
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13613..13858
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=2 Tax=Clostridium RepID=R9CEI1_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
rpsP; 30S ribosomal protein S16
L3_123_000G1_scaffold_246_16
Clostridium tetani, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13905..14132
DNA (228bp) protein (76aa)
UPF0109 protein BN906_01342 n=1 Tax=Clostridium tetani 12124569 RepID=U6EXE2_CLOTA
nucleic acid binding protein, containing KHdomain
UPF0109 protein BN906_01342 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1231072 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetani 12124569.;"
L3_123_000G1_scaffold_246_17
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14191..14688
DNA (498bp) protein (166aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MFD3_9CLOT
rimM; ribosome maturation factor RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_123_000G1_scaffold_246_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14678..15394
DNA (717bp) protein (239aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase TrmD (EC:2.1.1.228)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPJ2_CLOSA
L3_123_000G1_scaffold_246_19
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15515..15862
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=1 Tax=Clostridium colicanis 209318 RepID=N9WFD1_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
rplS; ribosomal protein L19
L3_123_000G1_scaffold_246_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15944..16786
DNA (843bp) protein (281aa)
Ribosome biogenesis GTPase A n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QG79_9CLOT
ylqF; ribosome biogenesis GTP-binding protein YlqF
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_123_000G1_scaffold_246_21
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16803..17609
DNA (807bp) protein (269aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CDH6_9CLOT
L3_123_000G1_scaffold_246_22
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17665..18030)
DNA (366bp) protein (122aa)
UPF0102 protein BN542_01741 n=1 Tax=Clostridium sp. CAG:221 RepID=R6FWV2_9CLOT
UPF0102 protein BN542_01741 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
hypothetical protein
L3_123_000G1_scaffold_246_23
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18174..19697
DNA (1524bp) protein (508aa)
Putative Mg chelatase family protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FLV0_9CLOT
Putative Mg chelatase family protein {ECO:0000313|EMBL:CDG01609.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
Mg chelatase, subunit ChlI
L3_123_000G1_scaffold_246_24
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19713..20780
DNA (1068bp) protein (356aa)
DNA protecting protein DprA n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UX87_CLOBO
dprA; DNA protecting protein DprA
DNA protecting protein DprA {ECO:0000313|EMBL:EES49649.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_123_000G1_scaffold_246_25
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20765..22867
DNA (2103bp) protein (701aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
topA; DNA topoisomerase 1 (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EZ56_9CLOT
L3_123_000G1_scaffold_246_26
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23024..23800
DNA (777bp) protein (259aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EK42_9CLOT
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000256|HAMAP-Rule:MF_00621, ECO:0000256|SAAS:SAAS00044533}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
transcriptional repressor CodY
L3_123_000G1_scaffold_246_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24199..24900
DNA (702bp) protein (234aa)
30S ribosomal protein S2 n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IJD4_CLOBU
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
rpsB; 30S ribosomal protein S2
L3_123_000G1_scaffold_246_28
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24989..25900
DNA (912bp) protein (304aa)
Elongation factor Ts n=1 Tax=Clostridium colicanis 209318 RepID=N9WFZ1_9CLOT
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
tsf; elongation factor Ts
L3_123_000G1_scaffold_246_29
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25971..26684
DNA (714bp) protein (238aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
pyrH; uridylate kinase PyrH (EC:2.7.4.22)
Uridylate kinase n=2 Tax=Clostridium butyricum RepID=M8KCM3_CLOBU
L3_123_000G1_scaffold_246_30
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26695..27252
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TPL3_9CLOT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
frr; ribosome-recycling factor Frr
Displaying items 1-30 of 96 in total

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