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L3_123_000G1_scaffold_478

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_123_000G1_scaffold_478_1
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(1..135)
DNA (135bp) protein (45aa)
30S ribosomal protein S2 n=4 Tax=Bifidobacterium RepID=RS2_BIFAA
30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_123_000G1_scaffold_478_2
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(397..882)
DNA (486bp) protein (162aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
Peptide deformylase n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5U6_BIFAD
peptide deformylase 2
L3_123_000G1_scaffold_478_3
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(885..2924)
DNA (2040bp) protein (680aa)
Long-chain-fatty acid CoA ligase {ECO:0000313|EMBL:KFI98480.1}; EC=6.2.1.3 {ECO:0000313|EMBL:KFI98480.1};; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
AMP-binding enzyme n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5U7_BIFAD
long-chain-fatty acid CoA ligase
L3_123_000G1_scaffold_478_4
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3041..3691)
DNA (651bp) protein (217aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=A1A1H6_BIFAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII76246.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_123_000G1_scaffold_478_5
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3840..4958)
DNA (1119bp) protein (373aa)
IMP dehydrogenase family protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5U9_BIFAD
GMP reductase
IMP dehydrogenase family protein {ECO:0000313|EMBL:EDN82937.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
L3_123_000G1_scaffold_478_6
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5094..6314
DNA (1221bp) protein (407aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
Isocitrate dehydrogenase [NADP] n=3 Tax=root RepID=A1A1H4_BIFAA
isocitrate dehydrogenase
L3_123_000G1_scaffold_478_7
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6436..7944
DNA (1509bp) protein (503aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A1H3_BIFAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF39556.1}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
L3_123_000G1_scaffold_478_8
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8024..9853)
DNA (1830bp) protein (610aa)
AMP-binding enzyme n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5GXX7_9BIFI
AMP-binding protein {ECO:0000313|EMBL:KIM01302.1}; Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:AII76242.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
long-chain-fatty-acid--CoA ligase
L3_123_000G1_scaffold_478_9
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9966..10751)
DNA (786bp) protein (262aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=A1A1H1_BIFAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY20637.1}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
L3_123_000G1_scaffold_478_10
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10755..11141
DNA (387bp) protein (129aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R5GTC4_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY20635.1}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
hypothetical protein
L3_123_000G1_scaffold_478_11
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11470..12171)
DNA (702bp) protein (234aa)
ABC transporter, ATP-binding protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5V5_BIFAD
ABC transporter, ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDN82944.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
L3_123_000G1_scaffold_478_12
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12278..14053
DNA (1776bp) protein (592aa)
Putative YjeF domain protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5GTX6_9BIFI
Putative YjeF domain protein {ECO:0000313|EMBL:CCY20628.1}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
carbohydrate kinase superfamily protein
L3_123_000G1_scaffold_478_13
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14069..16744)
DNA (2676bp) protein (892aa)
ABC transporter n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A1G8_BIFAA
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:AII76237.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
efflux ABC transporter, permease protein
L3_123_000G1_scaffold_478_14
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16747..17352)
DNA (606bp) protein (202aa)
Efflux ABC transporter permease protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H789_9BIFI
ABC transporter
ABC transporter {ECO:0000313|EMBL:AJE05868.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_123_000G1_scaffold_478_15
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17346..18047)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5GXW3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY20624.1}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
ABC transporter
L3_123_000G1_scaffold_478_16
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18268..18957
DNA (690bp) protein (230aa)
Possible alpha beta hydrolase n=3 Tax=Bifidobacterium RepID=A1A1G6_BIFAA
alpha beta hydrolase
Possible alpha beta hydrolase {ECO:0000313|EMBL:BAF39549.1}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
L3_123_000G1_scaffold_478_17
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19110..20042
DNA (933bp) protein (311aa)
Transcriptional regulator LysR family n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H6T4_9BIFI
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EDN82950.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
transcriptional regulator CpsY
L3_123_000G1_scaffold_478_18
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20162..20857)
DNA (696bp) protein (232aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_01208}; Short=OPRT {ECO:0000255|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000255|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000255|HAMAP-Rule:MF_01208};; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
Orotate phosphoribosyltransferase n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=PYRE_BIFAA
L3_123_000G1_scaffold_478_19
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20894..21841)
DNA (948bp) protein (316aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
Dihydroorotate dehydrogenase n=2 Tax=Bifidobacterium adolescentis RepID=A1A1G2_BIFAA
pyrD; dihydroorotate dehydrogenase
L3_123_000G1_scaffold_478_20
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21844..22662)
DNA (819bp) protein (273aa)
Probable dihydroorotate dehydrogenase electron transfer subunit n=2 Tax=Bifidobacterium RepID=A1A1G1_BIFAA
pyrK; dihydroorotate dehydrogenase electron transfer subunit
2-polyprenylphenol hydroxylase {ECO:0000313|EMBL:KIM01110.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_123_000G1_scaffold_478_21
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22702..23664)
DNA (963bp) protein (321aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5GQC5_9BIFI
orotidine 5'-phosphate decarboxylase
L3_123_000G1_scaffold_478_22
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23664..25082)
DNA (1419bp) protein (473aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
Dihydroorotase n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5W8_BIFAD
dihydroorotase
L3_123_000G1_scaffold_478_23
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25087..25506)
DNA (420bp) protein (140aa)
Aspartate carbamoyltransferase regulatory chain n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A1F8_BIFAA
aspartate carbamoyltransferase regulatory chain
Aspartate carbamoyltransferase regulatory subunit {ECO:0000313|EMBL:KFI98498.1}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
L3_123_000G1_scaffold_478_24
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25506..26519)
DNA (1014bp) protein (338aa)
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
Aspartate carbamoyltransferase n=2 Tax=Bifidobacterium RepID=C0BT84_9BIFI
L3_123_000G1_scaffold_478_25
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26628..29738)
DNA (3111bp) protein (1037aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A1F6_BIFAA
glnE; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
L3_123_000G1_scaffold_478_26
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29830..30669)
DNA (840bp) protein (280aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
Methylenetetrahydrofolate reductase n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5X2_BIFAD
metF; 5,10-methylenetetrahydrofolate reductase
L3_123_000G1_scaffold_478_27
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30712..33018)
DNA (2307bp) protein (769aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
metE; 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5X3_BIFAD
L3_123_000G1_scaffold_478_28
unknown

Not on your lists

comp(33184..33333)
DNA (150bp) protein (50aa)

This feature has no annotations

L3_123_000G1_scaffold_478_29
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33434..34333)
DNA (900bp) protein (300aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XUG6_9BIFI
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EEB21882.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR01826.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
hypothetical protein
L3_123_000G1_scaffold_478_30
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34330..34743)
DNA (414bp) protein (138aa)
Putative holin, SPP1 family n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XUG7_9BIFI
Putative holin, SPP1 family {ECO:0000313|EMBL:EEB21883.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR01825.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
phagic holin Spp1 family protein
Displaying items 1-30 of 59 in total

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