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L3_123_000G1_scaffold_530

Search features with annotation key words

Displaying items 1-30 of 100 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_123_000G1_scaffold_530_1
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1..87)
DNA (87bp) protein (29aa)
50S ribosomal protein L2 n=1 Tax=Bacteroides fragilis HMW 616 RepID=K1FDF2_BACFG
LSU ribosomal protein L2P
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1073388 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 616.;"
L3_123_000G1_scaffold_530_2
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(95..385)
DNA (291bp) protein (97aa)
50S ribosomal protein L23 n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CTR0_BACPM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
50S ribosomal protein L23
L3_123_000G1_scaffold_530_3
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(406..1035)
DNA (630bp) protein (210aa)
50S ribosomal protein L4 n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CTR1_BACPM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
50S ribosomal protein L4
L3_123_000G1_scaffold_530_4
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1035..1652)
DNA (618bp) protein (206aa)
50S ribosomal protein L3 n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CTR2_BACPM
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
50S ribosomal protein L3
L3_123_000G1_scaffold_530_5
Bacteroides sp. 1_1_30, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1673..1978)
DNA (306bp) protein (102aa)
30S ribosomal protein S10 n=51 Tax=root RepID=RS10_BACTN
SSU ribosomal protein S10P
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=457387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_30.;"
L3_123_000G1_scaffold_530_6
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2073..4190)
DNA (2118bp) protein (706aa)
Elongation factor G n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CTR4_BACPM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
translation elongation factor G
L3_123_000G1_scaffold_530_7
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4220..4609)
DNA (390bp) protein (130aa)
30S ribosomal protein S7 n=3 Tax=Bacteroides RepID=B5CTR5_BACPM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
30S ribosomal protein S7
L3_123_000G1_scaffold_530_8
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(4701..5108)
DNA (408bp) protein (136aa)
30S ribosomal protein S12 n=2 Tax=Bacteroides RepID=B5CTR6_BACPM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
30S ribosomal protein S12
L3_123_000G1_scaffold_530_9
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5295..5618)
DNA (324bp) protein (108aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=B5CTR9_BACPM
Uncharacterized protein {ECO:0000313|EMBL:CCZ87301.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
hypothetical protein
L3_123_000G1_scaffold_530_10
Bacteroides sp. CAG:875, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5802..6785
DNA (984bp) protein (328aa)
Beta-xylosidase n=1 Tax=Bacteroides sp. CAG:875 RepID=R6ZRF7_9BACE
Beta-xylosidase {ECO:0000313|EMBL:CDD48675.1}; TaxID=1262752 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:875.;"
Beta-xylosidase
L3_123_000G1_scaffold_530_11
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6831..8720)
DNA (1890bp) protein (630aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5W3L1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ87302.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
DEAD/DEAH box helicase
L3_123_000G1_scaffold_530_12
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8780..9712)
DNA (933bp) protein (311aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CTR7_BACPM
L3_123_000G1_scaffold_530_13
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9717..10337)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VA76_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ87305.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
haloacid dehalogenase
L3_123_000G1_scaffold_530_14
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10334..12961)
DNA (2628bp) protein (876aa)
calcium-translocating P-type ATPase (EC:3.6.3.8)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VUS7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ87306.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
L3_123_000G1_scaffold_530_15
unknown

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comp(13135..13260)
DNA (126bp) protein (42aa)

This feature has no annotations

L3_123_000G1_scaffold_530_16
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13349..14107
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5W3M0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ87312.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
hypothetical protein
L3_123_000G1_scaffold_530_17
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14260..15618)
DNA (1359bp) protein (453aa)
Hydrophobic domain protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CTS6_BACPM
Hydrophobic domain protein {ECO:0000313|EMBL:EDY97364.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
integral membrane protein
L3_123_000G1_scaffold_530_18
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15672..17162)
DNA (1491bp) protein (497aa)
Polysaccharide biosynthesis protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CTS7_BACPM
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EDY97365.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
polysaccharide biosynthesis protein
L3_123_000G1_scaffold_530_19
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17171..18196)
DNA (1026bp) protein (342aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CTS8_BACPM
Holliday junction ATP-dependent DNA helicase ruvB
L3_123_000G1_scaffold_530_20
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18316..19122
DNA (807bp) protein (269aa)
4Fe-4S binding domain protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CTS9_BACPM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDY97367.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
4Fe-4S ferredoxin
L3_123_000G1_scaffold_530_21
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19139..20266
DNA (1128bp) protein (376aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CTT0_BACPM
tRNA-specific 2-thiouridylase mnmA
L3_123_000G1_scaffold_530_22
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20343..21911)
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5V9P9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ87318.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
Arylsulfatase A and related enzymes
L3_123_000G1_scaffold_530_23
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21933..25514)
DNA (3582bp) protein (1194aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046613};; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VHJ2_9BACE
lacZII; beta-galactosidase
L3_123_000G1_scaffold_530_24
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25528..27525)
DNA (1998bp) protein (666aa)
Glycosyl hydrolase family 20, catalytic domain protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CTT3_BACPM
Glycosyl hydrolase family 20, catalytic domain protein {ECO:0000313|EMBL:EDY97371.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
glycoside hydrolase
L3_123_000G1_scaffold_530_25
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28138..30906)
DNA (2769bp) protein (923aa)
Glycoside hydrolase family 92 n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VUU5_9BACE
Glycoside hydrolase family 92 {ECO:0000313|EMBL:CCZ87321.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
glycoside hydrolase
L3_123_000G1_scaffold_530_26
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30941..32167)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5W3N1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ87322.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
hypothetical protein
L3_123_000G1_scaffold_530_27
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32164..33057)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5V9Q5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ87323.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
glycerophosphoryl diester phosphodiesterase
L3_123_000G1_scaffold_530_28
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33078..34625)
DNA (1548bp) protein (516aa)
RagB/SusD domain protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VHJ7_9BACE
RagB/SusD domain protein {ECO:0000313|EMBL:CCZ87324.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
RagB/SusD domain-containing protein
L3_123_000G1_scaffold_530_29
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34637..37891)
DNA (3255bp) protein (1085aa)
TonB-dependent receptor plug n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VA93_9BACE
TonB-dependent receptor plug {ECO:0000313|EMBL:CCZ87325.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
TonB-dependent receptor plug
L3_123_000G1_scaffold_530_30
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


38218..40260
DNA (2043bp) protein (681aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VUV1_9BACE
Displaying items 1-30 of 100 in total

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