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L3_123_000G1_scaffold_910

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_123_000G1_scaffold_910_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(518..922)
DNA (405bp) protein (135aa)
RNA-binding protein n=4 Tax=Clostridium butyricum RepID=B1R1T0_CLOBU
RNA binding protein, contains ribosomal protein S1 domain {ECO:0000313|EMBL:KJZ84730.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
RNA binding protein
L3_123_000G1_scaffold_910_2
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1063..1359)
DNA (297bp) protein (99aa)
Septum formation initiator n=2 Tax=Clostridium butyricum RepID=M8JG03_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ83344.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
septum formation initiator
L3_123_000G1_scaffold_910_3

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comp(1433..1828)
DNA (396bp) protein (132aa)
Spore cortex biosynthesis protein YabQ n=3 Tax=Clostridium butyricum RepID=B1R1T2_CLOBU
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:ETJ16523.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
yabQ; spore cortex biosynthesis protein YabQ
L3_123_000G1_scaffold_910_4
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1838..2131)
DNA (294bp) protein (98aa)
Sporulation protein YabP n=4 Tax=Clostridium butyricum RepID=B1R1T3_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84738.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
YabP family protein
L3_123_000G1_scaffold_910_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2310..2570)
DNA (261bp) protein (87aa)
S4 domain protein n=4 Tax=Clostridium butyricum RepID=B1R1T4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84737.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ribosome-associated heat shock protein implicated in recycling of 50S subunit
L3_123_000G1_scaffold_910_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2635..2910)
DNA (276bp) protein (92aa)
DNA-binding protein HU n=5 Tax=Clostridium RepID=U5MP25_CLOSA
hup; DNA-binding protein HU
DNA-binding protein HU {ECO:0000313|EMBL:ENZ29597.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L3_123_000G1_scaffold_910_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3128..4579)
DNA (1452bp) protein (484aa)
Nucleoside triphosphate pyrophosphohydrolase MazG {ECO:0000313|EMBL:KJZ84708.1}; EC=3.6.1.8 {ECO:0000313|EMBL:KJZ84708.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
MazG family protein n=4 Tax=Clostridium butyricum RepID=B1R1T6_CLOBU
MazG family protein
L3_123_000G1_scaffold_910_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4595..6133)
DNA (1539bp) protein (513aa)
Stage V sporulation protein B n=3 Tax=Clostridium butyricum RepID=B1R1T7_CLOBU
Putative stage V sporulation protein B {ECO:0000313|EMBL:EEP52558.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
spoVB1; stage V sporulation protein B
L3_123_000G1_scaffold_910_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6258..6809)
DNA (552bp) protein (184aa)
Stage V sporulation protein T n=4 Tax=Clostridium butyricum RepID=B1R1T8_CLOBU
Stage V sporulation protein T {ECO:0000313|EMBL:ENZ29600.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
spoVT; stage V sporulation protein T
L3_123_000G1_scaffold_910_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7019..8050)
DNA (1032bp) protein (344aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
prsA1; foldase protein PrsA (EC:5.2.1.8)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=N9YPN4_CLOBU
L3_123_000G1_scaffold_910_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8176..11676)
DNA (3501bp) protein (1167aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
mfd; transcription-repair-coupling factor Mfd (EC:3.6.4.-)
Transcription-repair-coupling factor n=2 Tax=Clostridium butyricum RepID=M8JEP6_CLOBU
L3_123_000G1_scaffold_910_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11691..12266)
DNA (576bp) protein (192aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
pth; peptidyl-tRNA hydrolase Pth (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=2 Tax=Clostridium butyricum RepID=M8JG12_CLOBU
L3_123_000G1_scaffold_910_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12302..13723)
DNA (1422bp) protein (474aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AA33_CLOBU
integral membrane sensor signal transduction histidine kinase
L3_123_000G1_scaffold_910_14

Not on your lists

comp(13724..14410)
DNA (687bp) protein (229aa)
Transcriptional regulatory protein ResD n=4 Tax=Clostridium butyricum RepID=B1R1U3_CLOBU
Transcriptional regulatory protein ResD {ECO:0000313|EMBL:ETJ16534.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
srrA1; transcriptional regulatory protein SrrA
L3_123_000G1_scaffold_910_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14517..15482)
DNA (966bp) protein (322aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Ribose-phosphate pyrophosphokinase n=2 Tax=Clostridium butyricum RepID=B1R1U4_CLOBU
ribose-phosphate pyrophosphokinase
L3_123_000G1_scaffold_910_16
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15530..16900)
DNA (1371bp) protein (457aa)
glmU: bifunctional protein GlmU (EC:2.7.7.23 2.3.1.157)
Bifunctional protein GlmU n=4 Tax=Clostridium butyricum RepID=B1R1U5_CLOBU
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
L3_123_000G1_scaffold_910_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17126..17401)
DNA (276bp) protein (92aa)
Putative septation protein SpoVG n=1 Tax=Clostridium butyricum 60E.3 RepID=N9ZZD6_CLOBU
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
SpoVG family protein
L3_123_000G1_scaffold_910_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17610..18425)
DNA (816bp) protein (272aa)
Adenine phosphoribosyltransferase {ECO:0000313|EMBL:KJZ84700.1}; EC=2.4.2.7 {ECO:0000313|EMBL:KJZ84700.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Pur operon repressor n=4 Tax=Clostridium butyricum RepID=B1R1U7_CLOBU
pur operon repressor
L3_123_000G1_scaffold_910_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18897..20282
DNA (1386bp) protein (462aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
murC; UDP-N-acetylmuramate--L-alanine ligase MurC (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=4 Tax=Clostridium butyricum RepID=B1R1U8_CLOBU
L3_123_000G1_scaffold_910_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20328..21404)
DNA (1077bp) protein (359aa)
Proline dipeptidase n=4 Tax=Clostridium butyricum RepID=B1R1U9_CLOBU
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:EEP52528.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Xaa-Pro aminopeptidase
L3_123_000G1_scaffold_910_21
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21614..22312
DNA (699bp) protein (233aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Metallophosphoesterase n=2 Tax=Clostridium butyricum RepID=M8K9B0_CLOBU
metallophosphoesterase
L3_123_000G1_scaffold_910_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22585..23979
DNA (1395bp) protein (465aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
asnC; asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Clostridium butyricum 60E.3 RepID=N9ZZE3_CLOBU
L3_123_000G1_scaffold_910_23
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24085..24747)
DNA (663bp) protein (221aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
putative 3-methyladenine DNA glycosylase (EC:3.2.2.-)
Putative 3-methyladenine DNA glycosylase n=4 Tax=Clostridium butyricum RepID=N9YQ88_CLOBU
L3_123_000G1_scaffold_910_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24851..25726)
DNA (876bp) protein (292aa)
Aldose 1-epimerase n=2 Tax=Clostridium butyricum RepID=M8J5M0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ29616.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
lacX; protein LacX, chromosomal
L3_123_000G1_scaffold_910_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25771..26280)
DNA (510bp) protein (170aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=2 Tax=Clostridium butyricum RepID=M8K9B5_CLOBU
L3_123_000G1_scaffold_910_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26538..28466)
DNA (1929bp) protein (643aa)
leuC2; 3-isopropylmalate dehydratase large subunit 1 (EC:4.2.1.33)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=N9ZZF0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ29618.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L3_123_000G1_scaffold_910_27
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28600..29766)
DNA (1167bp) protein (389aa)
Homocitrate synthase n=4 Tax=Clostridium butyricum RepID=B1R1V6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ92918.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
aksA; trans-homoaconitate synthase
L3_123_000G1_scaffold_910_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30104..32212)
DNA (2109bp) protein (703aa)
Anaerobic ribonucleoside-triphosphate reductase n=3 Tax=Clostridium butyricum RepID=B1R1V7_CLOBU
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:ENZ29620.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
anaerobic ribonucleoside triphosphate reductase
L3_123_000G1_scaffold_910_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32578..33423
DNA (846bp) protein (282aa)
DegV family protein n=4 Tax=Clostridium butyricum RepID=B1R1V8_CLOBU
DegV family EDD domain-containing protein {ECO:0000313|EMBL:ENZ29621.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
DegV domain-containing protein
L3_123_000G1_scaffold_910_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33426..33884
DNA (459bp) protein (153aa)
Transcriptional regulator, PadR family n=2 Tax=Clostridium butyricum RepID=M8K9C0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ29622.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
transcriptional regulator, PadR family
Displaying items 1-30 of 54 in total

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