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dasL3_123_000G1_concoct_72_fa

L3_123_000G1_public_Collinsella_60_246
In projects: L3_123_000G1_public

Consensus taxonomy: Collinsella  →  Coriobacteriales  →  Coriobacteriia  →  Actinobacteria  →  Bacteria

Displaying items 151-200 of 459 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
L3_123_000G1_scaffold_5429
Genus: Collinsella (100%)
8 7178 bp 63.68 245.98 91.70
L3_123_000G1_scaffold_4950
Species: Collinsella sp. CAG:166 (50%)
6 7925 bp 58.83 233.26 91.68
L3_123_000G1_scaffold_3258
Species: Collinsella sp. 4_8_47FAA (60%)
5 12163 bp 59.39 241.57 91.68
L3_123_000G1_scaffold_4490
Class: Coriobacteriia (55.56%)
9 8804 bp 58.43 473.92 91.63
L3_123_000G1_scaffold_9894
Genus: Collinsella (100%)
3 3497 bp 59.91 214.60 91.62
L3_123_000G1_scaffold_6130
Genus: Collinsella (88.89%)
9 7439 bp 61.88 204.40 91.58
L3_123_000G1_scaffold_10265
Species: Collinsella sp. CAG:166 (50%)
2 3342 bp 58.14 240.22 91.56
L3_123_000G1_scaffold_8328
Species: Collinsella aerofaciens (66.67%)
3 4339 bp 59.81 249.15 91.54
L3_123_000G1_scaffold_25646
Species: Collinsella sp. CAG:166 (50%)
2 1121 bp 59.86 497.77 91.53
L3_123_000G1_scaffold_11711
Species: Collinsella sp. 4_8_47FAA (50%)
4 2832 bp 63.45 195.50 91.42
L3_123_000G1_scaffold_11647
Species: Collinsella sp. 4_8_47FAA (66.67%)
3 2855 bp 63.08 224.13 91.42
L3_123_000G1_scaffold_6170
Species: Collinsella sp. CAG:166 (75%)
8 6181 bp 58.15 492.83 91.39
L3_123_000G1_scaffold_6923
Species: Collinsella sp. CAG:166 (66.67%)
3 5456 bp 62.04 203.53 91.39
L3_123_000G1_scaffold_14423
Species: Collinsella sp. CAG:166 (100%)
2 2197 bp 60.95 210.56 91.35
L3_123_000G1_scaffold_4688
Species: Collinsella aerofaciens (62.5%)
8 8384 bp 56.50 190.79 91.25
L3_123_000G1_scaffold_9762
Species: Collinsella sp. CAG:166 (75%)
4 4515 bp 59.29 385.12 91.23
L3_123_000G1_scaffold_23364
Species: Collinsella sp. CAG:166 (100%)
1 1240 bp 61.61 191.98 91.21
L3_123_000G1_scaffold_6150
Species: Collinsella aerofaciens (66.67%)
6 6207 bp 60.59 196.09 91.20
L3_123_000G1_scaffold_6282
Species: Collinsella aerofaciens (50%)
10 9173 bp 58.30 437.62 91.18
L3_123_000G1_scaffold_20536
Species: Collinsella aerofaciens (50%)
4 1859 bp 57.83 450.56 91.18
L3_123_000G1_scaffold_7531
Genus: Collinsella (100%)
5 4919 bp 60.48 209.77 91.18
L3_123_000G1_scaffold_3190
Genus: Collinsella (100%)
16 13205 bp 62.92 243.46 91.12
L3_123_000G1_scaffold_1543
Genus: Collinsella (81.82%)
22 24941 bp 59.61 203.98 91.02
L3_123_000G1_scaffold_852
Class: Coriobacteriia (50%)
32 38268 bp 57.35 223.22 90.98
L3_123_000G1_scaffold_6459
Genus: Collinsella (100%)
12 5890 bp 60.15 474.63 90.97
L3_123_000G1_scaffold_20039
Species: Collinsella sp. CAG:166 (75%)
4 1471 bp 61.73 189.26 90.96
L3_123_000G1_scaffold_14872
Species: Collinsella aerofaciens (100%)
3 2111 bp 57.22 222.26 90.95
L3_123_000G1_scaffold_10451
Species: Collinsella aerofaciens (50%)
4 3269 bp 60.84 221.72 90.95
L3_123_000G1_scaffold_14202
Species: Collinsella aerofaciens (50%)
2 2240 bp 61.21 204.91 90.94
L3_123_000G1_scaffold_6974
Species: Collinsella sp. 4_8_47FAA (50%)
6 7862 bp 58.05 371.05 90.93
L3_123_000G1_scaffold_2307
Order: Clostridiales (56.25%)
16 16810 bp 54.31 165.29 90.89
L3_123_000G1_scaffold_4666
Genus: Collinsella (87.5%)
8 8430 bp 59.98 250.48 90.85
L3_123_000G1_scaffold_14633
Species: Collinsella sp. CAG:166 (100%)
2 2153 bp 60.61 236.74 90.85
L3_123_000G1_scaffold_8474
Species: Collinsella aerofaciens (75%)
4 4252 bp 62.44 221.54 90.80
L3_123_000G1_scaffold_8022
Species: Collinsella aerofaciens (100%)
4 4553 bp 62.79 251.14 90.80
L3_123_000G1_scaffold_5968
Species: Collinsella aerofaciens (66.67%)
6 6406 bp 62.80 195.57 90.76
L3_123_000G1_scaffold_11514
Species: Collinsella aerofaciens (50%)
2 2893 bp 63.19 216.26 90.74
L3_123_000G1_scaffold_26623
Species: Collinsella sp. 4_8_47FAA (100%)
1 1073 bp 62.72 192.22 90.59
L3_123_000G1_scaffold_11342
Order: Clostridiales (66.67%)
3 2951 bp 58.15 457.27 90.58
L3_123_000G1_scaffold_17950
Species: Collinsella sp. CAG:166 (50%)
2 1690 bp 62.19 225.44 90.53
L3_123_000G1_scaffold_7883
Species: Collinsella sp. 4_8_47FAA (60%)
5 4643 bp 59.04 471.71 90.52
L3_123_000G1_scaffold_1616
Class: Coriobacteriia (65%)
20 23047 bp 47.26 158.41 90.39
L3_123_000G1_scaffold_5182
Genus: Collinsella (100%)
8 7554 bp 58.10 198.37 90.39
L3_123_000G1_scaffold_10092
Species: Collinsella sp. CAG:166 (60%)
5 3418 bp 61.09 199.24 90.32
L3_123_000G1_scaffold_17167
Species: Collinsella sp. CAG:166 (100%)
1 1781 bp 64.35 238.43 90.29
L3_123_000G1_scaffold_15225
Species: Collinsella sp. CAG:166 (100%)
2 2058 bp 57.09 225.29 90.23
L3_123_000G1_scaffold_4305
Species: Collinsella sp. 4_8_47FAA (80%)
5 9240 bp 65.23 227.21 90.16
L3_123_000G1_scaffold_26007
Species: Collinsella aerofaciens (50%)
2 1102 bp 61.25 445.78 90.11
L3_123_000G1_scaffold_15165
Species: Collinsella aerofaciens (66.67%)
3 2067 bp 59.51 213.35 89.99
L3_123_000G1_scaffold_26416
Species: Collinsella sp. CAG:166 (50%)
2 1755 bp 60.68 194.44 89.91
Displaying items 151-200 of 459 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.