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L3_123_000G1_scaffold_21

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Displaying items 1-30 of 203 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_123_000G1_scaffold_21_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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268..960
DNA (693bp) protein (231aa)
Response regulator receiver domain protein n=8 Tax=Clostridium difficile RepID=G6BBV1_CLODI
Response regulator receiver domain protein {ECO:0000313|EMBL:EHJ26939.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
two-component system response regulator
L3_123_000G1_scaffold_21_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1156..3225
DNA (2070bp) protein (690aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
Two-component sensor histidine kinase n=1 Tax=Clostridium difficile CD002 RepID=U3W069_CLODI
Two-component sensor histidine kinase
L3_123_000G1_scaffold_21_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3431..3754)
DNA (324bp) protein (108aa)
Branched-chain amino acid transport protein n=7 Tax=Clostridium difficile RepID=G6BBV3_CLODI
hypothetical protein
Branched-chain amino acid transport protein {ECO:0000313|EMBL:EHJ26936.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_123_000G1_scaffold_21_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3747..4448)
DNA (702bp) protein (234aa)
AzlC family protein n=7 Tax=Clostridium difficile RepID=T3FGS0_CLODI
Putative azaleucine resistance protein AzlC {ECO:0000313|EMBL:EHJ25626.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_123_000G1_scaffold_21_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4726..6111)
DNA (1386bp) protein (462aa)
Bacterial regulatory s, gntR family protein n=2 Tax=Clostridium difficile RepID=T4ANU4_CLODI
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCL30508.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_123_000G1_scaffold_21_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6558..6980)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD69 RepID=T3A560_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ25629.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_123_000G1_scaffold_21_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7075..7227)
DNA (153bp) protein (51aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T3FIP8_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS87684.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_123_000G1_scaffold_21_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7458..10361
DNA (2904bp) protein (968aa)
Transcription antiterminator, PTS operon regulator n=1 Tax=Clostridium difficile CD002 RepID=U3W1I1_CLODI
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EHJ26891.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Transcription antiterminator, PTS operonregulator
L3_123_000G1_scaffold_21_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10394..10840
DNA (447bp) protein (149aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=8 Tax=Clostridium difficile RepID=G6BBV9_CLODI
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 {ECO:0000313|EMBL:EHJ25631.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
PTS system transporter subunit IIBC
L3_123_000G1_scaffold_21_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10963..11265
DNA (303bp) protein (101aa)
PTS system, IIb component n=177 Tax=Clostridium difficile RepID=C9XL73_CLODC
PTS system transporter subunit IIB
PTS system, fructose/mannitol family IIB component {ECO:0000313|EMBL:CCK94735.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_123_000G1_scaffold_21_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11446..12852
DNA (1407bp) protein (469aa)
PTS system Galactitol-specific IIC component n=8 Tax=Clostridium difficile RepID=G6BBW1_CLODI
PTS system Galactitol-specific IIC component {ECO:0000313|EMBL:EHJ26888.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
PTS system fructose/mannitol family transporter subunit IIC
L3_123_000G1_scaffold_21_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13196..14254
DNA (1059bp) protein (353aa)
GroES-like protein n=7 Tax=Clostridium difficile RepID=G6BBW2_CLODI
GroES-like protein {ECO:0000313|EMBL:EHJ26887.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
sugar dehydrogenase
L3_123_000G1_scaffold_21_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14356..15042
DNA (687bp) protein (229aa)
araD; L-ribulose-5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:CDS87671.1}; EC=5.1.3.4 {ECO:0000313|EMBL:CDS87671.1};; L-ribulose-5-phosphate 4-epimerase (Phosphoribulose isomerase) {ECO:0000313|EMBL:CDT13883.1}; EC=5.1.3.4 {ECO:0000313|EMBL:CDT13883.1};; L-ribulose-5-phosphate 4-epimerase(Phosphoribulose isomerase) {ECO:0000313|EMBL:CEJ98887.1}; EC=5.1.3.4 {ECO:0000313|EMBL:CEJ98887.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L-ribulose-5-phosphate 4-epimerase n=172 Tax=Clostridium difficile RepID=T3GII6_CLODC
L3_123_000G1_scaffold_21_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15060..15707
DNA (648bp) protein (216aa)
Class II aldolase (EC:4.1.2.17)
Class II Aldolase and Adducin N-terminal domain protein n=7 Tax=Clostridium difficile RepID=T3L536_CLODI
Putative L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:EHJ26885.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_123_000G1_scaffold_21_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15879..17246)
DNA (1368bp) protein (456aa)
Amino acid carrier family protein n=167 Tax=Clostridium difficile RepID=T3GK66_CLODC
Sodium:alanine symporter
Sodium:alanine symporter {ECO:0000313|EMBL:CDS85718.1}; Sodium:solute symporter {ECO:0000313|EMBL:CKH27086.1}; Uncharacterized transporter HI_0883 {ECO:0000313|EMBL:CDS87667.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_123_000G1_scaffold_21_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17952..20072
DNA (2121bp) protein (707aa)
DNA topoisomerase 3 {ECO:0000256|HAMAP-Rule:MF_00953}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00953};; DNA topoisomerase III {ECO:0000256|HAMAP-Rule:MF_00953}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
topB2; DNA topoisomerase III (EC:5.99.1.2)
DNA topoisomerase n=6 Tax=Clostridium difficile RepID=G6BBW6_CLODI
L3_123_000G1_scaffold_21_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20176..21429
DNA (1254bp) protein (418aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=T3L035_CLODI
Putative flagellar protein FliS {ECO:0000313|EMBL:EHJ26882.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
conserved hypothetical protein
L3_123_000G1_scaffold_21_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21583..22644)
DNA (1062bp) protein (354aa)
Sporulation integral membrane protein YtvI n=7 Tax=Clostridium difficile RepID=G6BBW8_CLODI
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:EHJ25640.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
sporulation integral membrane protein
L3_123_000G1_scaffold_21_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22918..23658
DNA (741bp) protein (247aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6BBW9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ26880.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_123_000G1_scaffold_21_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23670..25448
DNA (1779bp) protein (593aa)
HTH domain protein n=8 Tax=Clostridium difficile RepID=G6BBX0_CLODI
HTH domain protein {ECO:0000313|EMBL:EHJ26879.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
transcription antiterminator
L3_123_000G1_scaffold_21_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25615..26532
DNA (918bp) protein (306aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Tagatose-6-phosphate kinase n=8 Tax=Clostridium difficile RepID=G6BBX1_CLODI
fruK; 1-phosphofructokinase
L3_123_000G1_scaffold_21_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26569..28488
DNA (1920bp) protein (640aa)
PTS system fructose-specific EIIABC component n=7 Tax=Clostridium difficile RepID=G6BBX2_CLODI
PTS system fructose-specific EIIABC component {ECO:0000313|EMBL:EHJ26877.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
PTS system transporter subunit IIBC
L3_123_000G1_scaffold_21_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29084..30610
DNA (1527bp) protein (509aa)
Putative oxidoreductase, FAD dependent n=1 Tax=Clostridium difficile CD002 RepID=U3W2K0_CLODI
FAD dependent oxidoreductase {ECO:0000313|EMBL:EHJ26876.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative oxidoreductase, FAD dependent
L3_123_000G1_scaffold_21_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30638..31195
DNA (558bp) protein (186aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6BBX4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ26875.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative membrane protein
L3_123_000G1_scaffold_21_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31717..32760
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD002 RepID=U3W043_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ25647.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_123_000G1_scaffold_21_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32871..34013
DNA (1143bp) protein (381aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
prsA; Peptidyl-prolyl cis-trans isomerase, PpiC-type (EC:5.2.1.8)
PPIC-type PPIASE domain protein n=8 Tax=Clostridium difficile RepID=G6BBX6_CLODI
L3_123_000G1_scaffold_21_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34201..34347
DNA (147bp) protein (49aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=G6BBX7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ25649.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_123_000G1_scaffold_21_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34469..35860
DNA (1392bp) protein (464aa)
H+ symporter family protein n=207 Tax=Clostridium difficile RepID=C9XL55_CLODC
proton-dependent oligopeptide transporter
Probable proton-dependent oligopeptide transporter {ECO:0000313|EMBL:CBE05265.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_123_000G1_scaffold_21_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36113..37906
DNA (1794bp) protein (598aa)
Creatinase n=8 Tax=Clostridium difficile RepID=G6BBX9_CLODI
Creatinase {ECO:0000313|EMBL:EHJ26869.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
M24 family peptidase
L3_123_000G1_scaffold_21_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37987..39369)
DNA (1383bp) protein (461aa)
Amino acid/peptide transporter n=8 Tax=Clostridium difficile RepID=G6BBY0_CLODI
Amino acid/peptide transporter {ECO:0000313|EMBL:EHJ26868.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
proton-dependent oligopeptide transporter
Displaying items 1-30 of 203 in total

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