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L3_123_000G1_scaffold_181

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_123_000G1_scaffold_181_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..813)
DNA (813bp) protein (271aa)
Amidohydrolase n=10 Tax=Clostridium difficile RepID=G6B756_CLODI
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:EHJ31465.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_123_000G1_scaffold_181_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(827..1291)
DNA (465bp) protein (155aa)
Uncharacterized protein n=200 Tax=Clostridium difficile RepID=G6B757_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQE68626.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L3_123_000G1_scaffold_181_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1306..2148)
DNA (843bp) protein (281aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B758_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ31197.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_123_000G1_scaffold_181_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2523..3539)
DNA (1017bp) protein (339aa)
Bacterial regulatory s, lacI family protein n=181 Tax=Clostridium difficile RepID=T3I4F1_CLODC
Transcriptional regulator, LacI family
Bacterial regulatory s, lacI family protein {ECO:0000313|EMBL:EQE68640.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_123_000G1_scaffold_181_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3722..4084)
DNA (363bp) protein (121aa)
Stage V sporulation protein AE n=189 Tax=Clostridium difficile RepID=C9XM04_CLODC
spoVAE; stage V sporulation protein AE
Stage V sporulation protein AE {ECO:0000313|EMBL:CCL20889.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_123_000G1_scaffold_181_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4098..5111)
DNA (1014bp) protein (338aa)
Stage V sporulation protein AD n=10 Tax=Clostridium difficile RepID=G6B761_CLODI
Stage V sporulation protein AD {ECO:0000313|EMBL:EHJ31200.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
stage V sporulation protein AD
L3_123_000G1_scaffold_181_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5278..5715)
DNA (438bp) protein (146aa)
Stage V sporulation protein AC n=220 Tax=Clostridium difficile RepID=C9XM02_CLODC
stage V sporulation protein AC
Stage V sporulation protein AC {ECO:0000313|EMBL:EQG78279.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_123_000G1_scaffold_181_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6002..6766)
DNA (765bp) protein (255aa)
RNA polymerase sigma factor n=194 Tax=Clostridium difficile RepID=C9XM01_CLODC
sigF; RNA polymerase sigma-F factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_123_000G1_scaffold_181_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6789..7217)
DNA (429bp) protein (143aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor (Stage II sporulation protein AB) {ECO:0000313|EMBL:CCL32871.1}; EC=2.7.11.1 {ECO:0000313|EMBL:CCL32871.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Anti-sigma F factor n=216 Tax=Clostridium difficile RepID=C9XM00_CLODC
L3_123_000G1_scaffold_181_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7231..7566)
DNA (336bp) protein (112aa)
Anti-sigma F factor antagonist n=221 Tax=Clostridium difficile RepID=C9XLZ9_CLODC
anti-sigma F factor antagonist
Anti-sigma F factor antagonist {ECO:0000256|RuleBase:RU003749}; Stage II sporulation protein {ECO:0000256|RuleBase:RU003749}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_123_000G1_scaffold_181_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7653..9923)
DNA (2271bp) protein (757aa)
Molybdopterin oxidoreductase n=5 Tax=Clostridium difficile RepID=G6B766_CLODI
Molybdopterin oxidoreductase {ECO:0000313|EMBL:EHJ31475.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
formate dehydrogenase
L3_123_000G1_scaffold_181_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10254..11867)
DNA (1614bp) protein (538aa)
Helicase conserved C-terminal domain protein n=209 Tax=Clostridium difficile RepID=C9XLY9_CLODC
ATP-dependent RNA helicase
Helicase conserved C-terminal domain protein {ECO:0000313|EMBL:EQE68663.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_123_000G1_scaffold_181_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11958..13019)
DNA (1062bp) protein (354aa)
K+-dependent Na+/Ca+ exchanger family protein n=2 Tax=Clostridium difficile RepID=G6B768_CLODI
K+-dependent Na+/Ca+ exchanger family protein {ECO:0000313|EMBL:EHJ31207.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Ca2+/Na+ antiporter
L3_123_000G1_scaffold_181_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13312..15543
DNA (2232bp) protein (744aa)
plfB; pyruvate formate-lyase (EC:2.3.1.54)
Formate C-acetyltransferase n=10 Tax=Clostridium difficile RepID=G6B769_CLODI
Formate C-acetyltransferase {ECO:0000313|EMBL:EHJ31208.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_123_000G1_scaffold_181_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15703..16437
DNA (735bp) protein (245aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Pyruvate formate-lyase 1-activating enzyme n=10 Tax=Clostridium difficile RepID=G6B770_CLODI
plfA; pyruvate formate-lyase activating enzyme
L3_123_000G1_scaffold_181_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16555..18225)
DNA (1671bp) protein (557aa)
Diguanylate cyclase domain protein n=9 Tax=Clostridium difficile RepID=G6B771_CLODI
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EHJ31210.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
signaling protein
L3_123_000G1_scaffold_181_17
unknown

Not on your lists

18740..18892
DNA (153bp) protein (51aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=U3VT38_CLODI
L3_123_000G1_scaffold_181_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19638..20279)
DNA (642bp) protein (214aa)
Nitroreductase family protein n=2 Tax=Clostridium difficile RepID=T2VVL4_CLODI
reductase
Nitroreductase family protein {ECO:0000313|EMBL:EQE68664.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_123_000G1_scaffold_181_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20520..21323)
DNA (804bp) protein (268aa)
Prepilin-type cleavage/methylation protein n=8 Tax=Clostridium difficile RepID=G6B773_CLODI
Prepilin-type cleavage/methylation protein {ECO:0000313|EMBL:EHJ30715.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
fimbrial protein
L3_123_000G1_scaffold_181_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21459..22634)
DNA (1176bp) protein (392aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
Probable tRNA sulfurtransferase n=2 Tax=Clostridium difficile RepID=D5Q0Y7_CLODI
thiI; thiamine biosynthesis protein ThiI
L3_123_000G1_scaffold_181_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22680..23831)
DNA (1152bp) protein (384aa)
Aminotransferase class-V family protein n=35 Tax=Clostridium difficile RepID=T2UC45_CLODI
Aminotransferase class-V family protein {ECO:0000313|EMBL:EQG78011.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
iscS1; cysteine desulfurase
L3_123_000G1_scaffold_181_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24477..25199)
DNA (723bp) protein (241aa)
Amino acid ABC transporter, ATP-binding protein n=191 Tax=Clostridium difficile RepID=C9XLY0_CLODC
amino acid ABC transporter ATP-binding protein
Glutamine ABC transporter, ATP-binding protein GlnQ {ECO:0000313|EMBL:EHJ30718.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_123_000G1_scaffold_181_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25258..25935)
DNA (678bp) protein (226aa)
Amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein n=220 Tax=Clostridium difficile RepID=C9XLX9_CLODC
amino acid ABC transporter permease
ABC-type transport system, aminoacid-family permease {ECO:0000313|EMBL:CCL00656.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_123_000G1_scaffold_181_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25963..26778)
DNA (816bp) protein (272aa)
Amino acid ABC transporter, substrate-binding protein n=203 Tax=Clostridium difficile RepID=C9XLX8_CLODC
amino acid ABC transporter substrate-binding protein
Bacterial extracellular solute-binding s, 3 family protein {ECO:0000313|EMBL:EQG77967.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_123_000G1_scaffold_181_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27062..27205)
DNA (144bp) protein (48aa)
Uncharacterized protein n=13 Tax=Clostridium difficile RepID=G6B779_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL00654.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_123_000G1_scaffold_181_26
unknown

Not on your lists

27409..27687
DNA (279bp) protein (93aa)

This feature has no annotations

L3_123_000G1_scaffold_181_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27809..29872)
DNA (2064bp) protein (688aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Putative DNA helicase, UvrD/REP type n=1 Tax=Clostridium difficile CD002 RepID=U3VWJ7_CLODI
putative DNA helicase, UvrD/REP type
L3_123_000G1_scaffold_181_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29952..32981)
DNA (3030bp) protein (1010aa)
Diguanylate cyclase domain protein n=6 Tax=Clostridium difficile RepID=G6B781_CLODI
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EHJ30723.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative diguanylate kinase signaling protein
L3_123_000G1_scaffold_181_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33034..34494)
DNA (1461bp) protein (487aa)
Bacterial extracellular solute-binding family protein n=8 Tax=Clostridium difficile RepID=T3GH28_CLODI
Putative lipoprotein {ECO:0000313|EMBL:CCL20868.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
lipoprotein
L3_123_000G1_scaffold_181_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34586..34960)
DNA (375bp) protein (125aa)
Uncharacterized protein n=11 Tax=Clostridium difficile RepID=G6B783_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ30725.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
Displaying items 1-30 of 88 in total

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