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L3_123_000G1_scaffold_775

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_123_000G1_scaffold_775_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(325..1992)
DNA (1668bp) protein (556aa)
Phosphoribulokinase/uridine kinase family protein n=9 Tax=Clostridium difficile RepID=G6B2H7_CLODI
phosphoribulokinase/uridine kinase
Phosphoribulokinase/uridine kinase family protein {ECO:0000313|EMBL:EHJ28376.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_123_000G1_scaffold_775_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2066..2821)
DNA (756bp) protein (252aa)
Xylose isomerase-like TIM barrel family protein n=149 Tax=Clostridium difficile RepID=T3IDQ3_CLODC
putative sugar isomerase / endonuclease
Putative sugar isomerase / endonuclease {ECO:0000313|EMBL:CAJ67389.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_123_000G1_scaffold_775_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2831..3367)
DNA (537bp) protein (179aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Signal peptidase I n=212 Tax=Clostridium difficile RepID=C9XKJ6_CLODC
singal peptidase I
L3_123_000G1_scaffold_775_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3533..4069)
DNA (537bp) protein (179aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Signal peptidase I n=211 Tax=Clostridium difficile RepID=C9XKJ5_CLODC
signal peptidase I
L3_123_000G1_scaffold_775_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4169..5479)
DNA (1311bp) protein (437aa)
NOL1/NOP2/sun family protein n=8 Tax=Clostridium difficile RepID=G6B2H6_CLODI
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EHJ28372.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
methylase
L3_123_000G1_scaffold_775_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5558..6274)
DNA (717bp) protein (239aa)
Uncharacterized protein n=150 Tax=Clostridium difficile RepID=G6B2H5_CLODI
sleB; spore-cortex-lytic protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ34828.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_123_000G1_scaffold_775_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6519..7790
DNA (1272bp) protein (424aa)
Spore cortex-lytic enzyme pre-pro-form n=192 Tax=Clostridium difficile RepID=Q188Z5_CLOD6
sleC; spore cortex-lytic enzyme pre-pro-form
Peptidoglycan binding domain protein {ECO:0000313|EMBL:EHJ34826.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_123_000G1_scaffold_775_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8261..8917)
DNA (657bp) protein (219aa)
Uncharacterized protein n=136 Tax=Clostridium difficile RepID=G6B2H2_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL32402.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_123_000G1_scaffold_775_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10130..10540)
DNA (411bp) protein (137aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B2H1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ28367.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_123_000G1_scaffold_775_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10756..12138)
DNA (1383bp) protein (461aa)
Putative penicillin-binding peptidase BlaR1-like, M56 family n=1 Tax=Clostridium difficile CD002 RepID=U3VY44_CLODI
Peptidase, M56 family {ECO:0000313|EMBL:EHJ34823.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
penicillin-binding protein
L3_123_000G1_scaffold_775_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12149..12508)
DNA (360bp) protein (120aa)
Transcriptional regulator, BlaI/MecI/CopY family n=7 Tax=Clostridium difficile RepID=G6B2G9_CLODI
Transcriptional regulator, BlaI/MecI/CopY family {ECO:0000313|EMBL:EHJ34822.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
penicillin-binding protein repressor
L3_123_000G1_scaffold_775_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12713..13492)
DNA (780bp) protein (260aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B2G8_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ28363.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_123_000G1_scaffold_775_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13940..14599)
DNA (660bp) protein (220aa)
Uncharacterized protein n=12 Tax=Clostridium difficile RepID=G6B2G7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ28362.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
lipoprotein
L3_123_000G1_scaffold_775_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14642..15631)
DNA (990bp) protein (330aa)
putative ornithine cyclodeaminase (EC:4.3.1.12)
Ornithine cyclodeaminase n=8 Tax=Clostridium difficile RepID=G6B2G6_CLODI
Ornithine cyclodeaminase {ECO:0000313|EMBL:EHJ28361.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_123_000G1_scaffold_775_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15698..16561)
DNA (864bp) protein (288aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B2G5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ28360.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_123_000G1_scaffold_775_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16667..17263)
DNA (597bp) protein (199aa)
cheB; putative protein-glutamate methylesterase (EC:3.1.1.61)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=U3VRZ9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL32370.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_123_000G1_scaffold_775_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17303..18106)
DNA (804bp) protein (268aa)
cheR; Methyl-accepting chemotaxis proteinsmethyltransferase, MCP family (EC:2.1.1.80)
Methyltransferase domain protein n=124 Tax=Clostridium difficile RepID=T3IER0_CLODC
CheR methyltransferase, SAM binding domain protein {ECO:0000313|EMBL:EHJ34816.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_123_000G1_scaffold_775_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18142..18582)
DNA (441bp) protein (147aa)
CheW-like protein n=8 Tax=Clostridium difficile RepID=G6B2G2_CLODI
CheW-like protein {ECO:0000313|EMBL:EHJ28357.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
chemotaxis protein
L3_123_000G1_scaffold_775_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18596..20728)
DNA (2133bp) protein (711aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Chemotaxis protein CheA n=5 Tax=Clostridium difficile RepID=U3VU40_CLODI
cheA; chemotaxis protein
L3_123_000G1_scaffold_775_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20869..22572)
DNA (1704bp) protein (568aa)
Methyl-accepting chemotaxis (MCP) signaling domain protein n=205 Tax=Clostridium difficile RepID=T3IBU4_CLODC
Methyl-accepting chemotaxis (MCP) signaling domain protein {ECO:0000313|EMBL:EQG77946.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
putative methyl-accepting chemotaxisreceptor,MCP family
L3_123_000G1_scaffold_775_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22598..23557)
DNA (960bp) protein (320aa)
Diguanylate cyclase domain protein n=9 Tax=Clostridium difficile RepID=G6B2F0_CLODI
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EHJ28354.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative CheY-like chemosensory protein
L3_123_000G1_scaffold_775_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23693..24211)
DNA (519bp) protein (173aa)
CheW-like protein n=8 Tax=Clostridium difficile RepID=G6B2E9_CLODI
cheW; chemotaxis protein
CheW-like protein {ECO:0000313|EMBL:EHJ28353.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_123_000G1_scaffold_775_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24254..24739)
DNA (486bp) protein (162aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Clostridium difficile CD69 RepID=T3AFB3_CLODI
chemotaxis protein
L3_123_000G1_scaffold_775_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24736..25257)
DNA (522bp) protein (174aa)
CheC-like family protein n=7 Tax=Clostridium difficile RepID=G6B2E7_CLODI
CheC-like family protein {ECO:0000313|EMBL:EHJ34809.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
cheC; chemotaxis protein CheC
L3_123_000G1_scaffold_775_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25418..25780)
DNA (363bp) protein (121aa)
Chemotaxis protein n=56 Tax=Clostridium difficile RepID=C9XKH4_CLODC
chemotaxis protein
Putative chemotaxis protein CheY {ECO:0000313|EMBL:EHJ34808.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_123_000G1_scaffold_775_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26570..26935
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=U3VRY7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ34807.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_123_000G1_scaffold_775_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27215..27712)
DNA (498bp) protein (166aa)
Transcriptional regulator, effector binding domain protein n=8 Tax=Clostridium difficile RepID=G6B2E4_CLODI
Transcriptional regulator, effector binding domain protein {ECO:0000313|EMBL:EHJ28348.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative transcriptional regulator
L3_123_000G1_scaffold_775_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27887..28798)
DNA (912bp) protein (304aa)
Transcriptional regulator, DeoR family n=1 Tax=Clostridium difficile CD002 RepID=U3VWE6_CLODI
DeoR family transcriptional regulator
HTH domain protein {ECO:0000313|EMBL:EHJ28347.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_123_000G1_scaffold_775_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29545..30396
DNA (852bp) protein (284aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=G6B2E2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ28346.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_123_000G1_scaffold_775_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30400..30870
DNA (471bp) protein (157aa)
Uncharacterized protein n=213 Tax=Clostridium difficile RepID=D5Q0B8_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL00456.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Displaying items 1-30 of 36 in total

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