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L3_123_000G1_scaffold_824

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_123_000G1_scaffold_824_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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410..592
DNA (183bp) protein (61aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=G6B5K1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ32247.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
conserved hypothetical protein
L3_123_000G1_scaffold_824_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1158..2072
DNA (915bp) protein (305aa)
Spore outer coat layer protein CotB n=1 Tax=Clostridium difficile CD002 RepID=U3VX83_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ29239.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
cotB; spore coat protein
L3_123_000G1_scaffold_824_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2463..3110
DNA (648bp) protein (216aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=D5Q6J5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCK97842.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
conserved hypothetical protein
L3_123_000G1_scaffold_824_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3277..3876)
DNA (600bp) protein (200aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=G6B5K4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ29241.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
intron RNA domain IV
L3_123_000G1_scaffold_824_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3851..4750)
DNA (900bp) protein (300aa)
Putative iron-sulfur binding protein n=1 Tax=Clostridium difficile CD002 RepID=U3VZL3_CLODI
Putative iron-sulfur binding protein {ECO:0000313|EMBL:CCL21631.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative iron-sulfur binding protein
L3_123_000G1_scaffold_824_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4761..4910)
DNA (150bp) protein (50aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=G6B5K6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ32252.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_123_000G1_scaffold_824_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4903..5487)
DNA (585bp) protein (195aa)
Redoxin family protein n=8 Tax=Clostridium difficile RepID=G6B5K7_CLODI
Redoxin family protein {ECO:0000313|EMBL:EHJ29244.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative thioredoxin
L3_123_000G1_scaffold_824_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5909..7234
DNA (1326bp) protein (442aa)
MATE efflux family protein n=7 Tax=Clostridium difficile RepID=G6B5K8_CLODI
MATE efflux family protein {ECO:0000313|EMBL:EHJ29245.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative drug/sodium antiporter, MATE family
L3_123_000G1_scaffold_824_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7329..8123)
DNA (795bp) protein (265aa)
ABC-type transport system, multidrug-family permease n=1 Tax=Clostridium difficile CD002 RepID=U3VYX1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ29246.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
ABC transporter permease
L3_123_000G1_scaffold_824_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8124..8999)
DNA (876bp) protein (292aa)
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=8 Tax=Clostridium difficile RepID=G6B5L0_CLODI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHJ29247.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_123_000G1_scaffold_824_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9003..9371)
DNA (369bp) protein (123aa)
Bacterial regulatory s, gntR family protein n=204 Tax=Clostridium difficile RepID=C9XJA4_CLODC
transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCL29648.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_123_000G1_scaffold_824_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9553..10212)
DNA (660bp) protein (220aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Deoxyribose-phosphate aldolase n=8 Tax=Clostridium difficile RepID=G6B5L3_CLODI
deoC; deoxyribose-phosphate aldolase
L3_123_000G1_scaffold_824_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10248..11792)
DNA (1545bp) protein (515aa)
Integral membrane protein MviN n=9 Tax=Clostridium difficile RepID=G6B5L4_CLODI
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
virulence factor MviN
L3_123_000G1_scaffold_824_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12266..13150)
DNA (885bp) protein (295aa)
RNA polymerase sigma factor n=1 Tax=Clostridium difficile (strain 630) RepID=Q18C16_CLOD6
rpoD2; RNA polymerase sigma factor rpoD
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_123_000G1_scaffold_824_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13441..13917)
DNA (477bp) protein (159aa)
Uncharacterized protein n=132 Tax=Clostridium difficile RepID=D5Q6E9_CLODI
Type I restriction enzyme R family protein {ECO:0000313|EMBL:EQG75986.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
uncharacterised protein
L3_123_000G1_scaffold_824_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14184..15359
DNA (1176bp) protein (392aa)
Signal peptide protein, YSIRK family n=154 Tax=Clostridium difficile RepID=G6B5L7_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQI00500.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_123_000G1_scaffold_824_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15440..16243)
DNA (804bp) protein (268aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Pyrroline-5-carboxylate reductase n=8 Tax=Clostridium difficile RepID=G6B5L8_CLODI
proC1; pyrroline-5-carboxylate reductase
L3_123_000G1_scaffold_824_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16283..16873)
DNA (591bp) protein (197aa)
Cupin domain protein n=14 Tax=Clostridium difficile RepID=G6B5L9_CLODI
transcriptional regulator
Cupin domain protein {ECO:0000313|EMBL:EHJ32265.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_123_000G1_scaffold_824_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17752..18360)
DNA (609bp) protein (203aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Putative 3-methyladenine DNA glycosylase n=212 Tax=Clostridium difficile RepID=3MGH_CLOD6
3-methyladenine DNA glycosylase
L3_123_000G1_scaffold_824_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18469..21207)
DNA (2739bp) protein (913aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=5 Tax=Clostridium difficile RepID=G6BIJ4_CLODI
two-component sensor histidine kinase
L3_123_000G1_scaffold_824_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21355..22146)
DNA (792bp) protein (264aa)
Lipoprotein, YaeC family n=9 Tax=Clostridium difficile RepID=G6B5M2_CLODI
Lipoprotein, YaeC family {ECO:0000313|EMBL:EHJ32268.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
metQ; D-methionine ABC transporter substrate-binding protein
L3_123_000G1_scaffold_824_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22182..22838)
DNA (657bp) protein (219aa)
ABC transporter, permease protein n=9 Tax=Clostridium difficile RepID=G6B5M3_CLODI
ABC transporter, permease protein {ECO:0000313|EMBL:EHJ32269.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
metI; D-methionine ABC transporter permease
L3_123_000G1_scaffold_824_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22831..23796)
DNA (966bp) protein (322aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
metN; ABC-type transport system, methionine-specificATP-binding protein (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=7 Tax=Clostridium difficile RepID=G6B5M4_CLODI
L3_123_000G1_scaffold_824_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24297..25241)
DNA (945bp) protein (315aa)
HTH domain protein n=8 Tax=Clostridium difficile RepID=G6B5M5_CLODI
HTH domain protein {ECO:0000313|EMBL:EHJ32271.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
DeoR family transcriptional regulator
L3_123_000G1_scaffold_824_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25352..25819
DNA (468bp) protein (156aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B5M6_CLODI
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ29263.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_123_000G1_scaffold_824_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25987..26586)
DNA (600bp) protein (200aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B5M7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ29264.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
lipoprotein
L3_123_000G1_scaffold_824_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26832..27428
DNA (597bp) protein (199aa)
Uncharacterized protein n=194 Tax=Clostridium difficile RepID=Q18C06_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ32274.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_123_000G1_scaffold_824_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27522..28514)
DNA (993bp) protein (331aa)
ABC transporter, substrate-binding protein, aliphatic sulfonates family n=8 Tax=Clostridium difficile RepID=G6B5M9_CLODI
ABC transporter, substrate-binding protein, aliphatic sulfonates family {ECO:0000313|EMBL:EHJ29266.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
aliphatic sulfonate ABC transporter substrate-binding protein
L3_123_000G1_scaffold_824_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28515..29246)
DNA (732bp) protein (244aa)
ABC transporter, ATP-binding protein n=7 Tax=Clostridium difficile RepID=G6B5N0_CLODI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHJ29267.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
aliphatic sulfonates ABC transporter ATP-binding protein
L3_123_000G1_scaffold_824_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29239..30009)
DNA (771bp) protein (257aa)
ABC transporter, permease protein n=7 Tax=Clostridium difficile RepID=G6B5N1_CLODI
ABC transporter, permease protein {ECO:0000313|EMBL:EHJ32277.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
ssuC; aliphatic sulfonate ABC transporter permease
Displaying items 1-30 of 39 in total

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