ggKbase home page

L3_128_000G1_scaffold_30

Search features with annotation key words

Displaying items 1-30 of 171 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_30_1
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(217..1599)
DNA (1383bp) protein (461aa)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
pyridoxal-phosphate dependent TrpB-like enzyme (EC:4.2.1.20)
Pyridoxal-phosphate dependent TrpB-like enzyme n=5 Tax=Clostridiales RepID=A5KKD8_9FIRM
L3_128_000G1_scaffold_30_2
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2188..2544)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=5 Tax=Clostridiales RepID=A5KKD9_9FIRM
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
LSU ribosomal protein L20P
L3_128_000G1_scaffold_30_3
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2629..2826)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKE0_9FIRM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
LSU ribosomal protein L35P
L3_128_000G1_scaffold_30_4
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2885..3379)
DNA (495bp) protein (165aa)
Translation initiation factor IF-3 n=5 Tax=Clostridiales RepID=A5KKE1_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
bacterial translation initiation factor 3 (bIF-3)
L3_128_000G1_scaffold_30_5
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3833..5158
DNA (1326bp) protein (442aa)
Transporter n=4 Tax=Clostridiales RepID=E5XEY6_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
sodium-dependent amino acid transporter(proline, tryptophan)
L3_128_000G1_scaffold_30_6
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5273..6136)
DNA (864bp) protein (288aa)
EDD domain protein, DegV family n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKE4_9FIRM
EDD domain protein, DegV family {ECO:0000313|EMBL:EDK24895.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
EDD domain protein, DegV family
L3_128_000G1_scaffold_30_7
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6208..7572)
DNA (1365bp) protein (455aa)
UPF0210 protein RUMTOR_00697 n=5 Tax=Clostridiales RepID=A5KKE5_9FIRM
UPF0210 protein BN734_01621 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_128_000G1_scaffold_30_8
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7617..7889)
DNA (273bp) protein (91aa)
UPF0237 protein RUMTOR_00698 n=5 Tax=Clostridiales RepID=A5KKE6_9FIRM
UPF0237 protein BN734_01622 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
ACT domain-containing protein
L3_128_000G1_scaffold_30_9
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7907..8704)
DNA (798bp) protein (266aa)
Metallo-beta-lactamase domain protein n=5 Tax=Clostridiales RepID=A5KKE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25809.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Metal-dependent hydrolases of the beta-lactamase superfamily I
L3_128_000G1_scaffold_30_10
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8701..9285)
DNA (585bp) protein (195aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=5 Tax=Clostridiales RepID=A5KKE8_9FIRM
L3_128_000G1_scaffold_30_11
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9325..11940)
DNA (2616bp) protein (872aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase n=4 Tax=Lachnospiraceae RepID=A5KKE9_9FIRM
L3_128_000G1_scaffold_30_12
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12060..12674
DNA (615bp) protein (205aa)
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Haloacid dehalogenase-like hydrolase n=5 Tax=Clostridiales RepID=A5KKF0_9FIRM
HAD-superfamily hydrolase {ECO:0000313|EMBL:EFV20091.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_128_000G1_scaffold_30_13
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12836..13291)
DNA (456bp) protein (152aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKF1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25813.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_128_000G1_scaffold_30_14
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13834..15669)
DNA (1836bp) protein (612aa)
LPXTG-motif cell wall anchor domain protein n=5 Tax=Clostridiales RepID=A5KKF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25814.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
cell wall binding repeat-containing protein/mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein
L3_128_000G1_scaffold_30_15
unknown

Not on your lists

comp(16150..16332)
DNA (183bp) protein (61aa)

This feature has no annotations

L3_128_000G1_scaffold_30_16
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16423..17697)
DNA (1275bp) protein (425aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=5 Tax=Clostridiales RepID=E5XEZ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84964.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_128_000G1_scaffold_30_17
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17757..19193)
DNA (1437bp) protein (479aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=5 Tax=Clostridiales RepID=A5KKF5_9FIRM
L3_128_000G1_scaffold_30_18
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19266..20132)
DNA (867bp) protein (289aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QYH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84962.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L3_128_000G1_scaffold_30_19
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20443..24699
DNA (4257bp) protein (1419aa)
BadF/BadG/BcrA/BcrD ATPase n=5 Tax=Clostridiales RepID=E5XEZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84961.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
CoA-substrate-specific enzyme activase, putative
L3_128_000G1_scaffold_30_20
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24818..25468)
DNA (651bp) protein (217aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
HAD hydrolase, family IA, variant 1 n=3 Tax=Clostridiales RepID=A5KKF8_9FIRM
HAD hydrolase family IA variant 1 {ECO:0000313|EMBL:CCZ25819.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_128_000G1_scaffold_30_21
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25577..26080)
DNA (504bp) protein (168aa)
Transcription elongation factor GreA n=5 Tax=Clostridiales RepID=A5KKG0_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
transcription elongation factor GreA
L3_128_000G1_scaffold_30_22
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26197..27735)
DNA (1539bp) protein (513aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=3 Tax=unclassified Lachnospiraceae RepID=E5XF02_9FIRM
L3_128_000G1_scaffold_30_23
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27905..28651)
DNA (747bp) protein (249aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=3 Tax=unclassified Lachnospiraceae RepID=E5XF03_9FIRM
L3_128_000G1_scaffold_30_24
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28685..29884)
DNA (1200bp) protein (400aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
3-phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=5 Tax=Clostridiales RepID=A5KKG3_9FIRM
L3_128_000G1_scaffold_30_25
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30034..31053)
DNA (1020bp) protein (340aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=5 Tax=Clostridiales RepID=A5KKG4_9FIRM
L3_128_000G1_scaffold_30_26
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31199..32041)
DNA (843bp) protein (281aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Putative uncharacterized protein n=3 Tax=unclassified Lachnospiraceae RepID=F3AVT4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84953.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_128_000G1_scaffold_30_27
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32055..33125)
DNA (1071bp) protein (357aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=5 Tax=Clostridiales RepID=A5KKG6_9FIRM
L3_128_000G1_scaffold_30_28
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33125..33562)
DNA (438bp) protein (146aa)
Fe-S iron-sulfur cluster assembly protein, NifU family n=5 Tax=Clostridiales RepID=A5KKG7_9FIRM
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:EGG84951.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_128_000G1_scaffold_30_29
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33647..34834)
DNA (1188bp) protein (396aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=3 Tax=Lachnospiraceae RepID=A5KKG8_9FIRM
L3_128_000G1_scaffold_30_30
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34871..35299)
DNA (429bp) protein (143aa)
Iron-sulfur cluster assembly transcription factor IscR n=5 Tax=Clostridiales RepID=E5XF10_9FIRM
Iron-sulfur cluster assembly transcription factor IscR {ECO:0000313|EMBL:EFV20108.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
transcriptional regulator, BadM/Rrf2 family
Displaying items 1-30 of 171 in total

View Taxonomy