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L3_128_000G1_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 248 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_55_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..148
DNA (147bp) protein (49aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=U3Y8T2_CLODI
conserved hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EQE60799.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_128_000G1_scaffold_55_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

166..1584
DNA (1419bp) protein (473aa)
membrane-bound O-acyl transferase (EC:2.3.1.-)
Putative membrane-bound 0-ACYL transferase,MBOAT family {ECO:0000313|EMBL:CAJ69430.1}; EC=2.3.1.- {ECO:0000313|EMBL:CAJ69430.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
MBOAT, membrane-bound O-acyltransferase family protein n=87 Tax=Clostridium difficile RepID=T4ALQ2_CLODI
L3_128_000G1_scaffold_55_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1599..2807
DNA (1209bp) protein (403aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4Z957_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69429.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_128_000G1_scaffold_55_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2888..4276)
DNA (1389bp) protein (463aa)
Dicarboxylate family transmembrane symporter n=2 Tax=Clostridium difficile RepID=T4NJM5_CLODI
Dicarboxylate family transmembrane symporter {ECO:0000313|EMBL:EQH98504.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
sodium:glutamate/aspartate symporter family protein
L3_128_000G1_scaffold_55_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4617..5951
DNA (1335bp) protein (445aa)
Pyridine nucleotide-disulfide oxidoreductase family protein n=7 Tax=Clostridium difficile RepID=T3SYF1_CLODI
Pyridine nucleotide-disulfide oxidoreductase family protein {ECO:0000313|EMBL:EQI80538.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
coenzyme A disulfide reductase
L3_128_000G1_scaffold_55_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6080..6997)
DNA (918bp) protein (306aa)
rnz; Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3endonuclease) (EC:3.1.26.11)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Ribonuclease Z n=196 Tax=Clostridium difficile RepID=RNZ_CLOD6
L3_128_000G1_scaffold_55_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7205..8089
DNA (885bp) protein (295aa)
Uncharacterized protein n=23 Tax=Clostridium difficile RepID=T2WD50_CLODI
Putative lipoprotein {ECO:0000313|EMBL:CCL22891.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative lipoprotein
L3_128_000G1_scaffold_55_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8302..10143
DNA (1842bp) protein (614aa)
Putative membrane-associated 5'-nucleotidase/phosphoesterase {ECO:0000313|EMBL:CCL22890.1}; EC=3.1.3.5 {ECO:0000313|EMBL:CCL22890.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative membrane-associated5'-nucleotidase/phosphoesterase (EC:3.1.3.5)
Calcineurin-like phosphoesterase family protein n=41 Tax=Clostridium difficile RepID=T2V115_CLODI
L3_128_000G1_scaffold_55_9
unknown

Not on your lists

comp(10106..10306)
DNA (201bp) protein (67aa)

This feature has no annotations

L3_128_000G1_scaffold_55_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10427..11155
DNA (729bp) protein (243aa)
Two-component response regulator n=193 Tax=Clostridium difficile RepID=C9XMQ6_CLODC
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CBE05735.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_128_000G1_scaffold_55_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11149..12459
DNA (1311bp) protein (437aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=105 Tax=Clostridium difficile RepID=G6C064_CLODI
two-component sensor histidine kinase
L3_128_000G1_scaffold_55_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12576..13259
DNA (684bp) protein (228aa)
ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=55 Tax=Clostridium difficile RepID=T2TK02_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQE60812.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_128_000G1_scaffold_55_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13252..15009
DNA (1758bp) protein (586aa)
FtsX-like permease family protein n=2 Tax=Clostridium difficile RepID=T4Z8J9_CLODI
FtsX-like permease family protein {ECO:0000313|EMBL:EQE60792.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
ABC-type transport system, permease
L3_128_000G1_scaffold_55_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14978..15553
DNA (576bp) protein (192aa)
FtsX-like permease family protein n=2 Tax=Clostridium difficile RepID=T4KFX7_CLODI
ABC-type transport system, permease
FtsX-like permease family protein {ECO:0000313|EMBL:EQH98496.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_128_000G1_scaffold_55_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15833..16975
DNA (1143bp) protein (381aa)
alanine--glyoxylate transaminase (EC:2.6.1.-)
Aminotransferase, alanine--glyoxylate transaminase {ECO:0000313|EMBL:CCL22871.1}; EC=2.6.1.- {ECO:0000313|EMBL:CCL22871.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Aminotransferase class-V family protein n=38 Tax=Clostridium difficile RepID=T2TGK8_CLODI
L3_128_000G1_scaffold_55_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16994..17518
DNA (525bp) protein (175aa)
ECF-type riboflavin transporter, S component family protein n=30 Tax=Clostridium difficile RepID=T3GEH2_CLODC
membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ69418.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_128_000G1_scaffold_55_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17618..18436
DNA (819bp) protein (273aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=3 Tax=Clostridium difficile RepID=T2VF05_CLODI
Bacterial regulatory helix-turn-helix s, AraC family protein {ECO:0000313|EMBL:EQH98493.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Transcriptional regulator, AraC family
L3_128_000G1_scaffold_55_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18514..18825
DNA (312bp) protein (104aa)
Uncharacterized protein n=162 Tax=Clostridium difficile RepID=C9XMP9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ24631.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_128_000G1_scaffold_55_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19002..19667)
DNA (666bp) protein (222aa)
Uncharacterized protein n=118 Tax=Clostridium difficile RepID=T3GDK7_CLODC
Uncharacterized protein {ECO:0000313|EMBL:EQI80526.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
conserved hypothetical protein
L3_128_000G1_scaffold_55_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19778..20419)
DNA (642bp) protein (214aa)
Bacterial regulatory s, tetR family protein n=5 Tax=Clostridium difficile RepID=T4ANW2_CLODI
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EQH98490.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Transcriptional regulator, TetR family
L3_128_000G1_scaffold_55_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20593..22596)
DNA (2004bp) protein (668aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
Alpha amylase, catalytic domain protein n=2 Tax=Clostridium difficile RepID=T4PM66_CLODI
gbeA; glycogen branching enzyme
L3_128_000G1_scaffold_55_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22749..23387)
DNA (639bp) protein (213aa)
Regulatory protein RecX n=181 Tax=Clostridium difficile RepID=RECX_CLOD6
recX; Regulatory protein RecX
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_128_000G1_scaffold_55_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23663..24352
DNA (690bp) protein (230aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Probable nicotinate-nucleotide adenylyltransferase n=2 Tax=Clostridium difficile RepID=T4PME8_CLODI
nicotinate-nucleotide adenylyltransferase
L3_128_000G1_scaffold_55_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24353..24925
DNA (573bp) protein (191aa)
Uncharacterized protein n=202 Tax=Clostridium difficile RepID=T3GG84_CLODC
hydrolase
Uncharacterized protein {ECO:0000313|EMBL:EQE60789.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_128_000G1_scaffold_55_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25042..25392
DNA (351bp) protein (117aa)
Ribosomal silencing factor RsfS n=214 Tax=Clostridium difficile RepID=C9XMP4_CLODC
hypothetical protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_128_000G1_scaffold_55_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25746..28166
DNA (2421bp) protein (807aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
Leucine--tRNA ligase n=146 Tax=Clostridium difficile RepID=SYL_CLOD6
leuS; leucyl-tRNA synthetase
L3_128_000G1_scaffold_55_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29020..29688
DNA (669bp) protein (223aa)
VanZ like family protein n=104 Tax=Clostridium difficile RepID=T2TCD8_CLODI
Putative conjugative transposon antibiotic resistance protein {ECO:0000313|EMBL:CCL22858.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative conjugative transposon antibioticresistance protein
L3_128_000G1_scaffold_55_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30171..30701)
DNA (531bp) protein (177aa)
Integrase n=3 Tax=Clostridium difficile RepID=Q182K7_CLOD6
Integrase
Integrase {ECO:0000313|EMBL:CEJ99141.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_128_000G1_scaffold_55_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31413..32783
DNA (1371bp) protein (457aa)
Cell wall binding repeat 2 family protein n=2 Tax=Clostridium difficile RepID=T4PM17_CLODI
Cell wall binding repeat 2 family protein {ECO:0000313|EMBL:EQE60798.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
cwp29; Cell surface protein cwp29
L3_128_000G1_scaffold_55_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33142..33300
DNA (159bp) protein (53aa)
Uncharacterized protein n=97 Tax=Clostridium difficile RepID=G6C045_CLODI
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CDS88387.1}; Uncharacterised protein {ECO:0000313|EMBL:CKH35199.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Displaying items 1-30 of 248 in total

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