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L3_128_000G1_scaffold_65

Search features with annotation key words

Displaying items 1-30 of 146 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_65_1
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..272)
DNA (270bp) protein (90aa)
Relaxase/mobilization nuclease domain protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B9I1_9FIRM
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EDR46856.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
L3_128_000G1_scaffold_65_2
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

503..1885
DNA (1383bp) protein (461aa)
Recombinase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEP1_9FIRM
Recombinase {ECO:0000313|EMBL:EDS09824.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_128_000G1_scaffold_65_3
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1963..3783)
DNA (1821bp) protein (607aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JPH8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB63205.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
Subtilisin-like serine proteases
L3_128_000G1_scaffold_65_4
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3851..4810)
DNA (960bp) protein (320aa)
Auxin Efflux Carrier n=1 Tax=Clostridium sp. CAG:58 RepID=R6S179_9CLOT
Auxin Efflux Carrier {ECO:0000313|EMBL:CDC49066.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
auxin efflux carrier family protein
L3_128_000G1_scaffold_65_5
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4852..5769)
DNA (918bp) protein (306aa)
ABC-type transport system involved in Fe-S cluster assembly permease component n=1 Tax=Clostridium sp. CAG:58 RepID=R6RMZ5_9CLOT
ABC-type transport system involved in Fe-S cluster assembly permease component {ECO:0000313|EMBL:CDC49065.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L3_128_000G1_scaffold_65_6
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5772..6506)
DNA (735bp) protein (245aa)
Putative FeS assembly ATPase SufC n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D688_9CLOT
Putative FeS assembly ATPase SufC {ECO:0000313|EMBL:EEG53159.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
L3_128_000G1_scaffold_65_7
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6777..7658)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RJK4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC49063.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_128_000G1_scaffold_65_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7863..8387
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47708.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_128_000G1_scaffold_65_9
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9488..9844)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Clostridium sp. CAG:58 RepID=R6S5N0_9CLOT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
LSU ribosomal protein L20P
L3_128_000G1_scaffold_65_10
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9878..10075)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Clostridium sp. CAG:58 RepID=R6RSH8_9CLOT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
LSU ribosomal protein L35P
L3_128_000G1_scaffold_65_11
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10101..10595)
DNA (495bp) protein (165aa)
Translation initiation factor IF-3 n=1 Tax=Clostridium sp. CAG:58 RepID=R6RZ42_9CLOT
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
bacterial translation initiation factor 3 (bIF-3)
L3_128_000G1_scaffold_65_12
unknown

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comp(10816..10962)
DNA (147bp) protein (49aa)

This feature has no annotations

L3_128_000G1_scaffold_65_13
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10978..11292)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6SVI6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC50607.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Domain of Unknown Function (DUF1540).
L3_128_000G1_scaffold_65_14
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11354..11827)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6S5M7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC50606.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_128_000G1_scaffold_65_15
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11845..12438)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RSH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC50605.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_128_000G1_scaffold_65_16
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12444..13013)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RZ37_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC50604.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_128_000G1_scaffold_65_17
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13084..14451)
DNA (1368bp) protein (456aa)
Putative efflux protein MATE family n=1 Tax=Clostridium sp. CAG:58 RepID=R6RNX8_9CLOT
Putative efflux protein MATE family {ECO:0000313|EMBL:CDC50603.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
putative efflux protein, MATE family
L3_128_000G1_scaffold_65_18
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14633..14830
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6SVI3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC50602.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_128_000G1_scaffold_65_19
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14870..15907)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RN75_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC50383.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_128_000G1_scaffold_65_20
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16381..16818)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RYD3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC50384.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_128_000G1_scaffold_65_21
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16815..18344)
DNA (1530bp) protein (510aa)
UMUC domain protein DNA-repair protein n=1 Tax=Blautia sp. CAG:257 RepID=R5XNS9_9FIRM
UMUC domain protein DNA-repair protein {ECO:0000313|EMBL:CDA06037.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair
L3_128_000G1_scaffold_65_22
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18367..18834)
DNA (468bp) protein (156aa)
SsrA-binding protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RSH5_9CLOT
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
SsrA-binding protein
L3_128_000G1_scaffold_65_23
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18918..21080)
DNA (2163bp) protein (721aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Ribonuclease R n=1 Tax=Clostridium sp. CAG:58 RepID=R6SNV7_9CLOT
ribonuclease R
L3_128_000G1_scaffold_65_24
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21184..21417)
DNA (234bp) protein (78aa)
Preprotein translocase SecG subunit n=1 Tax=Clostridium sp. CAG:58 RepID=R6RKK2_9CLOT
Preprotein translocase SecG subunit {ECO:0000313|EMBL:CDC48290.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
preprotein translocase subunit SecG
L3_128_000G1_scaffold_65_25
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21479..22762)
DNA (1284bp) protein (428aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
enolase (EC:4.2.1.11)
Enolase n=1 Tax=Clostridium sp. CAG:58 RepID=R6RSH0_9CLOT
L3_128_000G1_scaffold_65_26
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22822..25242)
DNA (2421bp) protein (807aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Clostridium sp. CAG:58 RepID=R6RHD9_9CLOT
phenylalanyl-tRNA synthetase subunit beta
L3_128_000G1_scaffold_65_27
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25647..26666)
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Clostridium sp. CAG:58 RepID=R6SNV1_9CLOT
L3_128_000G1_scaffold_65_28
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27199..27663
DNA (465bp) protein (155aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R7AHI0_9CLOT
L3_128_000G1_scaffold_65_29
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27675..28031)
DNA (357bp) protein (119aa)
SpoVA protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RKH7_9CLOT
SpoVA protein {ECO:0000313|EMBL:CDC48260.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
SpoVA protein.
L3_128_000G1_scaffold_65_30
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28060..29106)
DNA (1047bp) protein (349aa)
Stage V sporulation protein AD (SpoVAD) n=1 Tax=Clostridium sp. CAG:58 RepID=R6RHB1_9CLOT
Stage V sporulation protein AD (SpoVAD) {ECO:0000313|EMBL:CDC48258.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Stage V sporulation protein AD (SpoVAD).
Displaying items 1-30 of 146 in total

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