ggKbase home page

L3_128_000G1_scaffold_143

Search features with annotation key words

Displaying items 1-30 of 111 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_143_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(121..1161)
DNA (1041bp) protein (347aa)
M42 glutamyl aminopeptidase n=5 Tax=Firmicutes RepID=E4LZY5_9CLOT
M42 glutamyl aminopeptidase family protein {ECO:0000313|EMBL:EQJ62411.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
peptidase M42 family protein
L3_128_000G1_scaffold_143_2
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1183..2439)
DNA (1257bp) protein (419aa)
Transporter, major facilitator family protein n=4 Tax=Firmicutes RepID=E4LZY6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO28489.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
major facilitator superfamily protein
L3_128_000G1_scaffold_143_3
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2505..3161)
DNA (657bp) protein (219aa)
Transcriptional regulator, TetR family n=5 Tax=Firmicutes RepID=E4LZY7_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EFR35866.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
TetR family transcriptional regulator
L3_128_000G1_scaffold_143_4
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

3313..3837
DNA (525bp) protein (175aa)
HAD phosphatase, family IIIA n=6 Tax=Firmicutes RepID=E4LZY8_9CLOT
Phosphatidylglycerophosphatase GEP4 {ECO:0000313|EMBL:CDC85732.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
L3_128_000G1_scaffold_143_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3830..4912
DNA (1083bp) protein (361aa)
Ribosome biogenesis GTPase YqeH n=5 Tax=Firmicutes RepID=E4LZY9_9CLOT
Ferrous iron transport B family protein {ECO:0000313|EMBL:EQJ62415.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
GTP-binding protein YqeH
L3_128_000G1_scaffold_143_6
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4912..5196
DNA (285bp) protein (95aa)
RNA-binding protein, YhbY family n=7 Tax=Firmicutes RepID=E4LZZ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY85521.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_128_000G1_scaffold_143_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5200..6228
DNA (1029bp) protein (343aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Nicotinate-nucleotide adenylyltransferase n=5 Tax=Firmicutes RepID=E4LZZ1_9CLOT
nadD; nicotinate-nucleotide adenylyltransferase
L3_128_000G1_scaffold_143_8
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6245..6583
DNA (339bp) protein (113aa)
Ribosomal silencing factor RsfS n=5 Tax=Firmicutes RepID=E4LZZ2_9CLOT
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Iojap-like protein
L3_128_000G1_scaffold_143_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6580..7293
DNA (714bp) protein (238aa)
Methyltransferase domain protein n=5 Tax=Firmicutes RepID=E4LZZ3_9CLOT
Methyltransferase domain protein {ECO:0000313|EMBL:EQJ62419.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
methyltransferase
L3_128_000G1_scaffold_143_10
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7290..7970
DNA (681bp) protein (227aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
MTA/SAH nucleosidase n=5 Tax=Firmicutes RepID=E4LZZ4_9CLOT
L3_128_000G1_scaffold_143_11
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

8151..8609
DNA (459bp) protein (153aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LZZ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC85725.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_128_000G1_scaffold_143_12
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8611..9147
DNA (537bp) protein (179aa)
DnaD domain protein n=5 Tax=Firmicutes RepID=E4LZZ6_9CLOT
DnaD domain protein {ECO:0000313|EMBL:EFR35817.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
DNA replication protein DnaD
L3_128_000G1_scaffold_143_13
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

9147..9794
DNA (648bp) protein (216aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
Endonuclease III n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B9B2_9FIRM
nth; endonuclease III
L3_128_000G1_scaffold_143_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10018..13581)
DNA (3564bp) protein (1188aa)
Penicillin binding transpeptidase domain protein n=1 Tax=Clostridium difficile P28 RepID=T4P3Z4_CLODI
Penicillin binding transpeptidase domain protein {ECO:0000313|EMBL:EQJ62424.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
penicillin-binding protein 1A
L3_128_000G1_scaffold_143_15
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13550..14167)
DNA (618bp) protein (206aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Holliday junction resolvase RecU n=7 Tax=Firmicutes RepID=E4LZZ9_9CLOT
Penicillin-binding protein-related factor A, putative recombinase
L3_128_000G1_scaffold_143_16
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14299..16950)
DNA (2652bp) protein (884aa)
Penicillin binding transpeptidase domain protein n=2 Tax=Clostridiales RepID=T4P4Q2_CLODI
Putative penicillin-binding protein 1A/1B {ECO:0000313|EMBL:EFR35766.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
penicillin-binding, 1A family protein
L3_128_000G1_scaffold_143_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17263..17586
DNA (324bp) protein (108aa)
DivIVA domain protein n=5 Tax=Firmicutes RepID=E4LZA3_9CLOT
DivIVA domain protein {ECO:0000313|EMBL:EQJ62427.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
cell division protein GpsB
L3_128_000G1_scaffold_143_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18262..19206
DNA (945bp) protein (315aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LZA4_9CLOT
Helix-turn-helix family protein {ECO:0000313|EMBL:EQJ62429.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
XRE family transcriptional regulator
L3_128_000G1_scaffold_143_19
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

19175..19780
DNA (606bp) protein (202aa)
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase n=5 Tax=Firmicutes RepID=H1ASG7_9FIRM
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CDC85716.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
L3_128_000G1_scaffold_143_20
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

19783..20244
DNA (462bp) protein (154aa)
Competence/damage-inducible protein CinA domain n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B9A5_9FIRM
Competence/damage-inducible protein CinA domain {ECO:0000313|EMBL:EHO28471.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
competence/damage-inducible protein CinA
L3_128_000G1_scaffold_143_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20278..21330
DNA (1053bp) protein (351aa)
Protein RecA n=5 Tax=Firmicutes RepID=E4LZA7_9CLOT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
recA; recombinase A
L3_128_000G1_scaffold_143_22
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

21483..23036
DNA (1554bp) protein (518aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
Ribonuclease Y n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B9A3_9FIRM
2',3'-cyclic-nucleotide 2'-phosphodiesterase
L3_128_000G1_scaffold_143_23
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23005..23823
DNA (819bp) protein (273aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=G1VN85_9FIRM
Metallophosphoesterase {ECO:0000313|EMBL:ENY85538.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
metallophosphoesterase
L3_128_000G1_scaffold_143_24
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23973..24146
DNA (174bp) protein (58aa)
Uncharacterized protein n=5 Tax=Erysipelotrichaceae RepID=G1VN86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY85539.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L3_128_000G1_scaffold_143_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24220..25656
DNA (1437bp) protein (479aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=4 Tax=Firmicutes RepID=E4LZB0_9CLOT
tRNA-i(6)A37 thiotransferase enzyme MiaB
L3_128_000G1_scaffold_143_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25858..27516
DNA (1659bp) protein (553aa)
Predicted hydrolase of the metallo-beta-lactamase superfamily (EC:3.1.-.-)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LZB1_9CLOT
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EQJ62436.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_128_000G1_scaffold_143_27
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

27547..29907
DNA (2361bp) protein (787aa)
Uncharacterized protein n=3 Tax=Erysipelotrichaceae RepID=H1ASF9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC85708.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
DNA translocase FtsK
L3_128_000G1_scaffold_143_28
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

30047..31150
DNA (1104bp) protein (368aa)
Basic membrane protein n=5 Tax=Firmicutes RepID=E4LZB3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO28462.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
basic membrane lipoprotein
L3_128_000G1_scaffold_143_29
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

31364..32905
DNA (1542bp) protein (514aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B995_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO28461.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
ABC transporter ATP-binding protein
L3_128_000G1_scaffold_143_30
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32883..33980
DNA (1098bp) protein (366aa)
Branched-chain amino acid ABC transporter, permease protein n=3 Tax=Firmicutes RepID=E4LZB5_9CLOT
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFR35730.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
inner-membrane translocator
Displaying items 1-30 of 111 in total

View Taxonomy