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L3_128_000G1_scaffold_158

Search features with annotation key words

Displaying items 1-30 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_158_1
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..169
DNA (168bp) protein (56aa)
Galactose/methyl galactoside import ATP-binding protein MglA {ECO:0000256|HAMAP-Rule:MF_01717}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01717};; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) (EC:3.6.3.17)
Monosaccharide ABC transporter ATP-binding protein CUT2 family (TC 3.A.1.2.-) n=1 Tax=Clostridium sp. CAG:169 RepID=R6BLI0_9CLOT
L3_128_000G1_scaffold_158_2
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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192..1211
DNA (1020bp) protein (340aa)
Inner-membrane translocator n=1 Tax=Clostridium sp. CAG:242 RepID=R6CT88_9CLOT
Inner-membrane translocator {ECO:0000313|EMBL:CDA78855.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
inner-membrane translocator
L3_128_000G1_scaffold_158_3
unknown

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1302..1580
DNA (279bp) protein (93aa)
hypothetical protein
L3_128_000G1_scaffold_158_4
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1635..1910)
DNA (276bp) protein (92aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YLQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO23860.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_128_000G1_scaffold_158_5
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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2096..2779
DNA (684bp) protein (228aa)
Spore cortex-lytic enzyme n=3 Tax=Clostridiales RepID=G9YLQ6_9FIRM
Spore cortex-lytic enzyme {ECO:0000313|EMBL:EDN00357.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
spore cortex-lytic protein
L3_128_000G1_scaffold_158_6
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2816..3355)
DNA (540bp) protein (180aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
2'-5' RNA ligase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYB6_9CLOT
2'-5' RNA ligase
L3_128_000G1_scaffold_158_7
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3536..4084)
DNA (549bp) protein (183aa)
Putative stage V sporulation protein T n=2 Tax=Clostridiales RepID=G9YS97_9FIRM
Putative stage V sporulation protein T {ECO:0000313|EMBL:EHM46463.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
spoVT; transcriptional regulator spoVT
L3_128_000G1_scaffold_158_8
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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comp(4215..4763)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XFQ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA13670.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
Predicted small molecule binding protein (contains 3H domain)
L3_128_000G1_scaffold_158_9
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4782..5642)
DNA (861bp) protein (287aa)
Nicotinate-nucleotide diphosphorylase (Carboxylating) {ECO:0000313|EMBL:EDM63422.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EDM63422.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Nicotinate-nucleotide diphosphorylase (Carboxylating) n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFL6_9FIRM
nadC; nicotinate-nucleotide diphosphorylase
L3_128_000G1_scaffold_158_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5646..6830)
DNA (1185bp) protein (395aa)
Aspartate oxidase (EC:1.4.3.16)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BKC8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD15574.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_128_000G1_scaffold_158_11
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6853..7758)
DNA (906bp) protein (302aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Quinolinate synthetase complex, A subunit n=2 Tax=Lachnospiraceae RepID=F7JL40_9FIRM
nadA; Quinolinate synthetase A
L3_128_000G1_scaffold_158_12
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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8071..9543
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YPK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM52605.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
cell wall binding repeat 2-containing protein
L3_128_000G1_scaffold_158_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9624..12812)
DNA (3189bp) protein (1063aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5S049_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQN60268.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_128_000G1_scaffold_158_14
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13104..14240)
DNA (1137bp) protein (379aa)
Cysteine desulfurase {ECO:0000313|EMBL:EOC99415.1}; EC=2.8.1.7 {ECO:0000313|EMBL:EOC99415.1};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
Cysteine desulfurase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CL32_9CLOT
cysteine desulfurase
L3_128_000G1_scaffold_158_15
unknown

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comp(14237..14494)
DNA (258bp) protein (86aa)

This feature has no annotations

L3_128_000G1_scaffold_158_16
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14491..15267)
DNA (777bp) protein (259aa)
Putative CoA-substrate-specific enzyme activase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NW66_9FIRM
Putative CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:EDM99723.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
CoA-substrate-specific enzyme activase, putative
L3_128_000G1_scaffold_158_17
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15264..16430)
DNA (1167bp) protein (389aa)
2-hydroxyglutaryl-CoA dehydratase, D-component n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NW67_9FIRM
2-hydroxyglutaryl-CoA dehydratase, D-component {ECO:0000313|EMBL:EDM99724.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB
L3_128_000G1_scaffold_158_18
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16742..17146)
DNA (405bp) protein (135aa)
atpC; ATP synthase F1, epsilon subunit (EC:3.6.3.14)
ATP synthase epsilon chain n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TLL7_9FIRM
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_128_000G1_scaffold_158_19
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17146..18546)
DNA (1401bp) protein (467aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
ATP synthase subunit beta n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UQT0_9FIRM
AtpD; F0F1-type ATP synthase subunit beta
L3_128_000G1_scaffold_158_20
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18616..19503)
DNA (888bp) protein (296aa)
atpG; ATP synthase F1, gamma subunit (EC:3.6.3.14)
ATP synthase gamma chain n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2ATS2_9CLOT
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_128_000G1_scaffold_158_21
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19491..21011)
DNA (1521bp) protein (507aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
atpA; ATP synthase F1, alpha subunit (EC:3.6.3.14)
ATP synthase subunit alpha n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TLM2_9FIRM
L3_128_000G1_scaffold_158_22
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21008..21532)
DNA (525bp) protein (175aa)
ATP synthase, F1 delta subunit (EC:3.6.3.14)
ATP synthase subunit delta n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TI81_9FIRM
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_128_000G1_scaffold_158_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21529..22017)
DNA (489bp) protein (163aa)
ATP synthase subunit b n=2 Tax=Clostridiales RepID=G9YRV9_9FIRM
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ATP synthase F0 subunit B
L3_128_000G1_scaffold_158_24
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22031..22249)
DNA (219bp) protein (73aa)
ATP synthase F0 subcomplex C subunit (EC:3.6.3.14)
ATP synthase F0, C subunit n=3 Tax=Clostridiales RepID=G9YRV8_9FIRM
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_128_000G1_scaffold_158_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22280..23065)
DNA (786bp) protein (262aa)
ATP synthase subunit a n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YRV7_9FIRM
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
F0F1 ATP synthase subunit A
L3_128_000G1_scaffold_158_26
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23105..23587)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TLN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC73150.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_128_000G1_scaffold_158_27
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23796..25433
DNA (1638bp) protein (546aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
citS; sensor protein CitS (EC:2.7.13.3)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CLR6_9FIRM
L3_128_000G1_scaffold_158_28
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25451..26095
DNA (645bp) protein (215aa)
Transcriptional regulatory protein n=2 Tax=Clostridiales RepID=G9YRV5_9FIRM
Transcriptional regulatory protein {ECO:0000256|PIRNR:PIRNR006171}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Response regulator of citrate/malate metabolism
L3_128_000G1_scaffold_158_29
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26160..26435
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2U3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97364.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_128_000G1_scaffold_158_30
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26485..27438)
DNA (954bp) protein (318aa)
Putative glucokinase n=3 Tax=Clostridiales RepID=G9YQW7_9FIRM
Putative glucokinase {ECO:0000313|EMBL:EHM50681.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
ROK family glucokinase
Displaying items 1-30 of 106 in total

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