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L3_128_000G1_scaffold_184

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_184_1
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(109..1302)
DNA (1194bp) protein (398aa)
ribBA; riboflavin biosynthesis protein RibBA (EC:4.1.99.12 3.5.4.25)
Riboflavin biosynthesis protein RibBA n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TPI5_9CLOT
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_128_000G1_scaffold_184_2
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1315..1968)
DNA (654bp) protein (218aa)
ribE; riboflavin synthase RibE (EC:2.5.1.9)
Riboflavin synthase RibE {ECO:0000313|EMBL:AGX42463.1}; EC=2.5.1.9 {ECO:0000313|EMBL:AGX42463.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Riboflavin synthase RibE n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPN5_CLOSA
L3_128_000G1_scaffold_184_3
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2048..3136)
DNA (1089bp) protein (363aa)
ribD: riboflavin biosynthesis protein RibD (EC:3.5.4.26 1.1.1.193)
Riboflavin biosynthesis protein RibD n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UX47_CLOBO
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_128_000G1_scaffold_184_4
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3568..4758)
DNA (1191bp) protein (397aa)
ST7 protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MS50_CLOSA
ST7 protein
ST7 protein {ECO:0000313|EMBL:AGX42461.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_128_000G1_scaffold_184_5
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5066..6067
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYM1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI98513.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L3_128_000G1_scaffold_184_6
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6766..8196)
DNA (1431bp) protein (477aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
purB; adenylosuccinate lyase PurB (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TPI9_9CLOT
L3_128_000G1_scaffold_184_7
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8396..8656)
DNA (261bp) protein (87aa)
Phosphotransferase system, phosphocarrier protein HPr n=2 Tax=Clostridium RepID=G7LYL8_9CLOT
Phosphotransferase system, phosphocarrier protein HPr {ECO:0000313|EMBL:EHI98510.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
PTS system phosphocarrier protein HPr
L3_128_000G1_scaffold_184_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8779..9039)
DNA (261bp) protein (87aa)
Stage V sporulation protein S n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSQ7_CLOSA
spoVS; stage V sporulation protein S
Stage V sporulation protein S {ECO:0000313|EMBL:AGX42457.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_128_000G1_scaffold_184_9
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9236..10771)
DNA (1536bp) protein (512aa)
rny; ribonuclease Y (EC:3.1.-.-)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Ribonuclease Y n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MS45_CLOSA
L3_128_000G1_scaffold_184_10
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11078..12172)
DNA (1095bp) protein (365aa)
Protein RecA n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MJX5_9CLOT
recA; protein RecA
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_128_000G1_scaffold_184_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12340..12930)
DNA (591bp) protein (197aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EES50868.1}; EC=2.7.8.5 {ECO:0000313|EMBL:EES50868.1};; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Clostridium botulinum E RepID=B2V4I2_CLOBA
L3_128_000G1_scaffold_184_12
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12914..14311)
DNA (1398bp) protein (466aa)
rimO; ribosomal protein S12 methylthiotransferase RimO (EC:2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPM9_CLOSA
L3_128_000G1_scaffold_184_13
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14468..16903)
DNA (2436bp) protein (812aa)
DNA segregation ATPase, FtsK/SpoIIIE family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T3G4_9CLOT
DNA segregation ATPase, FtsK/SpoIIIE family {ECO:0000313|EMBL:EKQ53938.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
ftsK; DNA translocase FtsK
L3_128_000G1_scaffold_184_14
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17074..17793)
DNA (720bp) protein (240aa)
Peptidase S14, ClpP n=2 Tax=Clostridium RepID=A6LSR4_CLOB8
peptidase S14, ClpP
Clp protease {ECO:0000313|EMBL:ETD71399.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L3_128_000G1_scaffold_184_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17866..19074)
DNA (1209bp) protein (403aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
dapG; aspartokinase 1 (EC:2.7.2.4)
Aspartokinase n=3 Tax=Clostridium butyricum RepID=B1QUX2_CLOBU
L3_128_000G1_scaffold_184_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19091..19372)
DNA (282bp) protein (94aa)
Sporulation protein, YlmC/YmxH family n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNV4_CLOSA
sporulation protein, YlmC/YmxH family
Sporulation protein, YlmC/YmxH family {ECO:0000313|EMBL:AGX42449.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_128_000G1_scaffold_184_17
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19432..20736)
DNA (1305bp) protein (435aa)
Processing peptidase {ECO:0000313|EMBL:EHI98500.1}; EC=3.4.24.64 {ECO:0000313|EMBL:EHI98500.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Processing peptidase n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYK8_9CLOT
peptidase M16 domain-containing protein
L3_128_000G1_scaffold_184_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20786..22891)
DNA (2106bp) protein (702aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
pnp; polyribonucleotide nucleotidyltransferase Pnp (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=3 Tax=Clostridium butyricum RepID=B1QUX5_CLOBU
L3_128_000G1_scaffold_184_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22980..23243)
DNA (264bp) protein (88aa)
30S ribosomal protein S15 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MS37_CLOSA
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_128_000G1_scaffold_184_20
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23375..24298)
DNA (924bp) protein (308aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
riboflavin kinase n=1 Tax=Clostridium beijerinckii RepID=UPI0002EDD1A3
ribC, ribF; bifunctional riboflavin kinase/FMN adenylyltransferase
L3_128_000G1_scaffold_184_21
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24315..25190)
DNA (876bp) protein (292aa)
truB; tRNA pseudouridine synthase B (EC:5.4.99.25)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
tRNA pseudouridine synthase B n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNV0_CLOSA
L3_128_000G1_scaffold_184_22
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25212..26192)
DNA (981bp) protein (327aa)
Phosphoesterase, RecJ domain protein n=2 Tax=Clostridium RepID=A6LSQ6_CLOB8
phosphoesterase domain-containing protein
Phosphoesterase, RecJ domain protein {ECO:0000313|EMBL:ABR33386.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_128_000G1_scaffold_184_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26185..26502)
DNA (318bp) protein (106aa)
Ribosome-binding factor A n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSP9_CLOSA
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
L3_128_000G1_scaffold_184_24
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26517..28586)
DNA (2070bp) protein (690aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MS32_CLOSA
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_128_000G1_scaffold_184_25
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28609..28923)
DNA (315bp) protein (105aa)
Ribosomal protein HS6-type n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MJV5_9CLOT
ribosomal protein HS6-type
Ribosomal protein HS6-type {ECO:0000313|EMBL:AGF55111.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_128_000G1_scaffold_184_26
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28916..29182)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G4Q7_CLOPA
Uncharacterized protein {ECO:0000313|EMBL:AJG97939.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
L3_128_000G1_scaffold_184_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29196..30341)
DNA (1146bp) protein (382aa)
Transcription termination factor NusA n=2 Tax=Clostridium butyricum RepID=B1QUY4_CLOBU
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
nusA; transcription termination/antitermination protein NusA
L3_128_000G1_scaffold_184_28
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30361..30825)
DNA (465bp) protein (155aa)
Ribosome maturation factor RimP n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T3H2_9CLOT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
rimP; ribosome maturation factor RimP
L3_128_000G1_scaffold_184_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31041..35384)
DNA (4344bp) protein (1448aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
polC; DNA polymerase III PolC (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JHQ9_CLOBU
L3_128_000G1_scaffold_184_30
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35485..36534)
DNA (1050bp) protein (350aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U9Q2_9CLOT
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Displaying items 1-30 of 122 in total

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