ggKbase home page

L3_128_000G1_scaffold_198

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_198_1
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(129..4508)
DNA (4380bp) protein (1460aa)
GBS Bsp-like repeat protein (Fragment) n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NF08_CLOSV
GBS Bsp-like repeat protein {ECO:0000313|EMBL:EDS06820.1}; Flags: Fragment;; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
N-acetylmuramidase/lysin
L3_128_000G1_scaffold_198_2
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4595..4942)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NB30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS80524.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_128_000G1_scaffold_198_3
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4956..5648)
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=E9RW23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD66184.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
putative glycosyl transferase
L3_128_000G1_scaffold_198_4
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5666..6808)
DNA (1143bp) protein (381aa)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5SWU3_9CLOT
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:CCZ58215.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
UDP-N-acetylglucosamine 2-epimerase
L3_128_000G1_scaffold_198_5
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

comp(6826..8025)
DNA (1200bp) protein (400aa)
NAD-dependent epimerase/dehydratase id=4390357 bin=GWF2_Clostridiales_38_85 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
epimerase
Tax=GWF2_Clostridiales_38_85_curated
L3_128_000G1_scaffold_198_6
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8033..9079)
DNA (1047bp) protein (349aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5TMM2_9CLOT
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CCZ58217.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
L3_128_000G1_scaffold_198_7
BJP_IG2103_SUB10_Tenericutes_35_49, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(9085..10290)
DNA (1206bp) protein (402aa)
Glycosyltransferase n=1 Tax=Firmicutes bacterium CAG:582 RepID=R6HS37_9FIRM
glycosyltransferase
Tax=BJP_IG2103_SUB10_Tenericutes_35_49
L3_128_000G1_scaffold_198_8
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10265..11527)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:389 RepID=R7LRF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE91115.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
hypothetical protein
L3_128_000G1_scaffold_198_9
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11529..12734)
DNA (1206bp) protein (402aa)
Glycosyltransferase n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JEQ3_9FIRM
Glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:CBK88675.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
L3_128_000G1_scaffold_198_10
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12753..14285)
DNA (1533bp) protein (511aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YP09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC74625.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
L3_128_000G1_scaffold_198_11
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14302..15222)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2Z881_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD66177.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
dTDP-glucose pyrophosphorylase
L3_128_000G1_scaffold_198_12
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15466..15729)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W028_9CLOT
Phosphocarrier, HPr family {ECO:0000313|EMBL:EFC99152.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
phosphocarrier HPr family protein
L3_128_000G1_scaffold_198_13
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15746..17023)
DNA (1278bp) protein (426aa)
YbbR-like protein n=2 Tax=Dorea RepID=A6BHG7_9FIRM
YbbR-like protein {ECO:0000313|EMBL:CDE21396.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_128_000G1_scaffold_198_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17001..17861)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22266.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein TIGR00159
L3_128_000G1_scaffold_198_15
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17899..19077)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Coprococcus comes CAG:19 RepID=R6MJN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB86037.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
hypothetical protein
L3_128_000G1_scaffold_198_16
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19078..19473)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BAS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG89197.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
hypothetical protein
L3_128_000G1_scaffold_198_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19522..20226)
DNA (705bp) protein (235aa)
ComF family protein n=2 Tax=Clostridium RepID=B6FJB4_9CLOT
ComF family protein {ECO:0000313|EMBL:EEA83896.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted amidophosphoribosyltransferases
L3_128_000G1_scaffold_198_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20227..22485)
DNA (2259bp) protein (753aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
helicase, putative, RecD/TraA family (EC:3.1.11.5)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFA7_9CLOT
L3_128_000G1_scaffold_198_19
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22536..23525)
DNA (990bp) protein (330aa)
Cell shape determining protein, MreB/Mrl family n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BXT9_9CLOT
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:EEG75396.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
rod shape-determining protein MreB
L3_128_000G1_scaffold_198_20
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23641..26481)
DNA (2841bp) protein (947aa)
UvrABC system protein A n=1 Tax=Dorea sp. CAG:317 RepID=R6WNF6_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
excinuclease ABC, A subunit
L3_128_000G1_scaffold_198_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26487..28466)
DNA (1980bp) protein (660aa)
UvrABC system protein B n=2 Tax=Clostridium RepID=B6FJB8_9CLOT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
excinuclease ABC, B subunit
L3_128_000G1_scaffold_198_22
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28810..29280)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31230.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_128_000G1_scaffold_198_23
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29322..29477)
DNA (156bp) protein (52aa)
Uncharacterized conserved protein UCP033199 n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6EBF2_SINMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK64805.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
L3_128_000G1_scaffold_198_24
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29474..29764)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WBE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD06720.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_128_000G1_scaffold_198_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29938..30312
DNA (375bp) protein (125aa)
Penicillinase repressor n=2 Tax=Lachnospiraceae RepID=A7B5K9_RUMGN
Penicillinase repressor {ECO:0000313|EMBL:EDN76796.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Predicted transcriptional regulator
L3_128_000G1_scaffold_198_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30328..31242
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8C0S3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20346.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Beta-lactamase
L3_128_000G1_scaffold_198_27
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31336..32769)
DNA (1434bp) protein (478aa)
glutamate--ammonia ligase (EC:6.3.1.2)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B691_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49724.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_128_000G1_scaffold_198_28
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32824..34554)
DNA (1731bp) protein (577aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
adenine deaminase (EC:3.5.4.2)
Adenine deaminase n=1 Tax=Dorea sp. CAG:317 RepID=R6XNM9_9FIRM
L3_128_000G1_scaffold_198_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34714..34881)
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FPJ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82055.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_128_000G1_scaffold_198_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34895..35770)
DNA (876bp) protein (292aa)
ABC transporter, permease protein n=2 Tax=Clostridium RepID=B6FPJ2_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA82056.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
binding-protein-dependent transport system inner membrane protein
Displaying items 1-30 of 84 in total

View Taxonomy