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L3_128_000G1_scaffold_208

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_208_1
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..679
DNA (678bp) protein (226aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
2-amino-3-ketobutyrate coenzyme A ligase n=4 Tax=Lachnospiraceae RepID=E9RSR4_9FIRM
2-amino-3-ketobutyrate coenzyme A ligase
L3_128_000G1_scaffold_208_2
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(775..1350)
DNA (576bp) protein (192aa)
Chromate transporter n=1 Tax=Eubacterium sp. CAG:603 RepID=R5P3C0_9FIRM
Chromate transporter {ECO:0000313|EMBL:CCZ04191.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
chromate transporter
L3_128_000G1_scaffold_208_3
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1347..1982)
DNA (636bp) protein (212aa)
Chromate transport protein n=2 Tax=Firmicutes RepID=A8REC6_9FIRM
Chromate transport protein {ECO:0000313|EMBL:EDP10509.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
chromate transporter
L3_128_000G1_scaffold_208_4
Paenibacillus sp. Y412MC10, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1996..3507)
DNA (1512bp) protein (504aa)
Sulfatase n=1 Tax=Geobacillus sp. (strain Y412MC10) RepID=D3ED13_GEOS4
sulfatase
Sulfatase {ECO:0000313|EMBL:ACX63056.1}; TaxID=481743 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Geobacillus sp. (strain Y412MC10).;"
L3_128_000G1_scaffold_208_5
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3664..4548
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0NF24_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB88695.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
LysR family transcriptional regulator
L3_128_000G1_scaffold_208_6
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4645..5535)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CXD8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA76211.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
Fe-S oxidoreductase
L3_128_000G1_scaffold_208_7
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5552..6841)
DNA (1290bp) protein (430aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SCQ2_9FIRM
L3_128_000G1_scaffold_208_8
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6856..7404)
DNA (549bp) protein (183aa)
Prephenate dehydrogenase {ECO:0000313|EMBL:EEG75025.1}; EC=1.3.1.12 {ECO:0000313|EMBL:EEG75025.1};; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BYU7_9CLOT
L3_128_000G1_scaffold_208_9
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7467..7952)
DNA (486bp) protein (162aa)
Prephenate dehydrogenase (EC:1.3.1.12)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WCX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07260.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
L3_128_000G1_scaffold_208_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8212..10287
DNA (2076bp) protein (692aa)
translation elongation factor 2 (EF-2/EF-G) (EC:3.6.5.3)
Putative translation elongation factor G n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSQ0_9CLOT
Putative translation elongation factor G {ECO:0000313|EMBL:EEA80924.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_128_000G1_scaffold_208_11
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10287..10997
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2Z4F4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD64857.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
ADP-ribose pyrophosphatase
L3_128_000G1_scaffold_208_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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11167..13374
DNA (2208bp) protein (736aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Ribonucleoside-diphosphate reductase n=2 Tax=Clostridium RepID=B6FSM0_9CLOT
ribonucleotide-diphosphate reductase subunit alpha
L3_128_000G1_scaffold_208_13
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13387..14430
DNA (1044bp) protein (348aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5TJW4_9CLOT
nrdF; ribonucleotide-diphosphate reductase subunit beta
L3_128_000G1_scaffold_208_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14564..16243
DNA (1680bp) protein (560aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=2 Tax=Clostridium RepID=B6FJF5_9CLOT
L3_128_000G1_scaffold_208_15
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16346..17755
DNA (1410bp) protein (470aa)
HTH-type transcriptional regulatory protein GabR n=1 Tax=Clostridium sp. D5 RepID=F0Z104_9CLOT
HTH-type transcriptional regulatory protein GabR {ECO:0000313|EMBL:EGB92106.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
L3_128_000G1_scaffold_208_16
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17760..19346
DNA (1587bp) protein (529aa)
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes (EC:2.7.8.-)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RUW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75087.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
L3_128_000G1_scaffold_208_17
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

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19541..20821
DNA (1281bp) protein (427aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RDY5_9FIRM
L3_128_000G1_scaffold_208_18
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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21100..22284
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IZR1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS27333.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
5-bromo-4-chloroindolyl phosphate hydrolysis protein.
L3_128_000G1_scaffold_208_19
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22288..23424
DNA (1137bp) protein (379aa)
Toxic anion resistance protein TelA n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5E1_9CLOT
Toxic anion resistance protein TelA {ECO:0000313|EMBL:EEG72678.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
toxic anion resistance family protein
L3_128_000G1_scaffold_208_20
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23441..23761
DNA (321bp) protein (107aa)
UPF0145 protein RUMTOR_01822 n=5 Tax=Clostridiales RepID=A5KNJ7_9FIRM
UPF0145 protein BN734_01710 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_128_000G1_scaffold_208_21
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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comp(23857..24867)
DNA (1011bp) protein (337aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
aspartate--ammonia ligase, AsnA-type (EC:6.3.1.1)
Aspartate--ammonia ligase n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XHP5_9FIRM
L3_128_000G1_scaffold_208_22
unknown

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25140..25286
DNA (147bp) protein (49aa)

This feature has no annotations

L3_128_000G1_scaffold_208_23
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25309..25530)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5B4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL26426.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_128_000G1_scaffold_208_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25650..26150
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83836.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_128_000G1_scaffold_208_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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26213..26935
DNA (723bp) protein (241aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJE3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83835.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_128_000G1_scaffold_208_26
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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27240..27746
DNA (507bp) protein (169aa)
YbgC/YbaW family acyl-CoA thioester hydrolase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3B8H4_9FIRM
YbgC/YbaW family acyl-CoA thioester hydrolase {ECO:0000313|EMBL:EGG79568.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
conserved hypothetical protein TIGR00051
L3_128_000G1_scaffold_208_27
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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27750..29672
DNA (1923bp) protein (641aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JJ77_9FIRM
L3_128_000G1_scaffold_208_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29790..30104
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PX63_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23016.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Domain of Unknown Function (DUF1540).
L3_128_000G1_scaffold_208_29
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30253..31653
DNA (1401bp) protein (467aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NCS6_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS07444.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Predicted permease
L3_128_000G1_scaffold_208_30
Coprococcus sp. CAG:131, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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32059..32397
DNA (339bp) protein (113aa)
Nitrogen regulatory protein PII n=2 Tax=Coprococcus RepID=D5HI15_9FIRM
Nitrogen regulatory protein PII
Nitrogen regulatory protein PII {ECO:0000313|EMBL:CDB80797.1}; TaxID=1262862 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:131.;"
Displaying items 1-30 of 81 in total

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