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L3_128_000G1_scaffold_272

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_272_1
unknown

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1..135
DNA (135bp) protein (45aa)

This feature has no annotations

L3_128_000G1_scaffold_272_2
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(195..827)
DNA (633bp) protein (211aa)
Flavin reductase n=5 Tax=Clostridiales RepID=A5KL35_9FIRM
NADPH-dependent FMN reductase {ECO:0000313|EMBL:EFV20393.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Multimeric flavodoxin WrbA
L3_128_000G1_scaffold_272_3
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1030..3465)
DNA (2436bp) protein (812aa)
Cation-transporting ATPase n=5 Tax=Clostridiales RepID=E5XE72_9FIRM
Cation-transporting ATPase {ECO:0000313|EMBL:EFV20392.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
ATPase, P-type (transporting), HAD superfamily, subfamily IC
L3_128_000G1_scaffold_272_4
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3635..5572)
DNA (1938bp) protein (646aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=5 Tax=Clostridiales RepID=A5KL33_9FIRM
L3_128_000G1_scaffold_272_5
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5636..8257)
DNA (2622bp) protein (874aa)
ATPase, P-type (transporting), HAD superfamily, subfamily IC (EC:3.6.3.8)
Calcium-transporting ATPase n=6 Tax=root RepID=E5XE70_9FIRM
Calcium-transporting ATPase {ECO:0000313|EMBL:EFV20390.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_128_000G1_scaffold_272_6
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8621..9955)
DNA (1335bp) protein (445aa)
Glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase n=3 Tax=unclassified Lachnospiraceae RepID=E5XE69_9FIRM
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_128_000G1_scaffold_272_7
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10207..10383)
DNA (177bp) protein (59aa)
30S ribosomal protein S21 n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G1H5_9FIRM
SSU ribosomal protein S21P
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
L3_128_000G1_scaffold_272_8
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10560..13202)
DNA (2643bp) protein (881aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=3 Tax=unclassified Lachnospiraceae RepID=E5XE67_9FIRM
L3_128_000G1_scaffold_272_9
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13390..14901)
DNA (1512bp) protein (504aa)
Fe-hydrogenase large subunit family protein n=3 Tax=unclassified Lachnospiraceae RepID=E5XE65_9FIRM
Fe-hydrogenase large subunit family protein {ECO:0000313|EMBL:EFV20413.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Iron only hydrogenase large subunit, C-terminal domain
L3_128_000G1_scaffold_272_10
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15021..17501)
DNA (2481bp) protein (827aa)
B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase. (EC:2.1.1.13)
Homocysteine S-methyltransferase n=5 Tax=Clostridiales RepID=E5XE64_9FIRM
Homocysteine S-methyltransferase {ECO:0000313|EMBL:EFV20412.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_128_000G1_scaffold_272_11
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17562..18203)
DNA (642bp) protein (214aa)
Vitamin B12 dependent methionine synthase, activation domain. (EC:2.1.1.13)
Vitamin B12 dependent methionine synthase, activation domain protein n=5 Tax=Clostridiales RepID=A5KL26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26432.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_128_000G1_scaffold_272_12
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18212..19081)
DNA (870bp) protein (290aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
5,10-methylenetetrahydrofolate reductase, prokaryotic form (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=4 Tax=Lachnospiraceae RepID=A5KL25_9FIRM
L3_128_000G1_scaffold_272_13
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19354..20802)
DNA (1449bp) protein (483aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
glycogen/starch synthases, ADP-glucose type (EC:2.4.1.21)
Glycogen synthase n=5 Tax=Clostridiales RepID=A5KL24_9FIRM
L3_128_000G1_scaffold_272_14
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20895..21686)
DNA (792bp) protein (264aa)
Putative sporulation transcription factor Spo0A n=2 Tax=Clostridiales RepID=A5KL23_9FIRM
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
L3_128_000G1_scaffold_272_15
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21794..22885)
DNA (1092bp) protein (364aa)
stage IV sporulation protein B (EC:3.4.21.116)
SpoIVB peptidase n=5 Tax=Clostridiales RepID=A5KL22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV20407.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_128_000G1_scaffold_272_16
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23018..24694)
DNA (1677bp) protein (559aa)
DNA repair protein RecN n=1 Tax=Ruminococcus torques CAG:61 RepID=R5R0C1_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
DNA replication and repair protein RecN
L3_128_000G1_scaffold_272_17
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24704..25162)
DNA (459bp) protein (153aa)
Arginine repressor n=5 Tax=Clostridiales RepID=A5KL19_9FIRM
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
transcriptional regulator, ArgR family
L3_128_000G1_scaffold_272_18
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25167..26000)
DNA (834bp) protein (278aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted sugar kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=5 Tax=Clostridiales RepID=A5KL18_9FIRM
L3_128_000G1_scaffold_272_19
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26045..26863)
DNA (819bp) protein (273aa)
Ribosomal RNA large subunit methyltransferase J n=5 Tax=Clostridiales RepID=A5KL17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81330.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hemolysin TlyA family protein
L3_128_000G1_scaffold_272_20
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26880..28739)
DNA (1860bp) protein (620aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
1-deoxy-D-xylulose-5-phosphate synthase n=5 Tax=Clostridiales RepID=A5KL16_9FIRM
1-deoxy-D-xylulose-5-phosphate synthase
L3_128_000G1_scaffold_272_21
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28757..29647)
DNA (891bp) protein (297aa)
Geranylgeranyl pyrophosphate synthase (EC:2.5.1.10)
Polyprenyl synthetase n=4 Tax=Lachnospiraceae RepID=A5KL15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81332.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_128_000G1_scaffold_272_22
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29637..29849)
DNA (213bp) protein (71aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Exonuclease VII small subunit. (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit n=5 Tax=Clostridiales RepID=E5XE52_9FIRM
L3_128_000G1_scaffold_272_23
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29872..31080)
DNA (1209bp) protein (403aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
exodeoxyribonuclease VII, large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit n=5 Tax=Clostridiales RepID=A5KL13_9FIRM
L3_128_000G1_scaffold_272_24
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31082..31489)
DNA (408bp) protein (136aa)
N utilization substance protein B homolog n=5 Tax=Clostridiales RepID=A5KL12_9FIRM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
transcription antitermination factor NusB
L3_128_000G1_scaffold_272_25
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31677..32207)
DNA (531bp) protein (177aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KL09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDK24647.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
hypothetical protein
L3_128_000G1_scaffold_272_26
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32170..33762)
DNA (1593bp) protein (531aa)
Peptide chain release factor 3 n=5 Tax=Clostridiales RepID=A5KL08_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
bacterial peptide chain release factor 3 (bRF-3)
L3_128_000G1_scaffold_272_27
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33942..34553)
DNA (612bp) protein (204aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5QAE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25670.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_128_000G1_scaffold_272_28
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34577..35173)
DNA (597bp) protein (199aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QH81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25669.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_128_000G1_scaffold_272_29
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35142..35522)
DNA (381bp) protein (127aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QAQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25668.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Stage III sporulation protein AF (Spore_III_AF).
L3_128_000G1_scaffold_272_30
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35613..36791)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QY43_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25667.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Stage III sporulation protein AE (spore_III_AE).
Displaying items 1-30 of 77 in total

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