ggKbase home page

L3_128_000G1_scaffold_290

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_290_1
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(176..490)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JIE7_CELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ84313.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_128_000G1_scaffold_290_2
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(698..2857)
DNA (2160bp) protein (720aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
pcrA1; ATP-dependent DNA helicase (EC:3.6.1.-)
ATP-dependent DNA helicase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GCE6_9FIRM
L3_128_000G1_scaffold_290_3
Clostridium sp. CAG:798, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3009..3344
DNA (336bp) protein (112aa)
Predicted transcriptional regulator n=1 Tax=Clostridium sp. CAG:798 RepID=R6XA14_9CLOT
Predicted transcriptional regulator {ECO:0000313|EMBL:CDD15944.1}; TaxID=1262841 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:798.;"
Helix-turn-helix.
L3_128_000G1_scaffold_290_4
unknown

Not on your lists

3384..3698
DNA (315bp) protein (105aa)

This feature has no annotations

L3_128_000G1_scaffold_290_5
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3783..6389)
DNA (2607bp) protein (869aa)
yloB1; calcium-translocating P-type ATPase YloB (EC:3.6.3.8)
Calcium-translocating P-type ATPase, PMCA-type n=4 Tax=Erysipelotrichaceae RepID=C3RK89_9FIRM
Putative potassium/sodium efflux P-type ATPase, fungal-type {ECO:0000313|EMBL:EDS19336.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
L3_128_000G1_scaffold_290_6
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6397..7107)
DNA (711bp) protein (237aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Pseudouridine synthase n=1 Tax=Staphylococcus hominis VCU122 RepID=H3VIN3_STAHO
rsuA; ribosomal small subunit pseudouridine synthase A
L3_128_000G1_scaffold_290_7
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7108..7404)
DNA (297bp) protein (99aa)
Predicted methylated DNA-protein cysteine methyltransferase (EC:2.1.1.63)
6-O-methylguanine DNA methyltransferase DNA binding domain protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F9S0_9CLOT
6-O-methylguanine DNA methyltransferase DNA binding domain protein {ECO:0000313|EMBL:CDE11213.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
L3_128_000G1_scaffold_290_8
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7553..8479)
DNA (927bp) protein (309aa)
Transcriptional regulator/sugar kinase n=1 Tax=Clostridium sp. CAG:590 RepID=R5E7S0_9CLOT
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:CCX88620.1}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
Transcriptional regulator/sugar kinase
L3_128_000G1_scaffold_290_9
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8863..9006)
DNA (144bp) protein (48aa)
Glyoxalase family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y8F7_9FIRM
Glyoxalase family protein {ECO:0000313|EMBL:EEF67739.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_128_000G1_scaffold_290_10
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9037..10647)
DNA (1611bp) protein (537aa)
Putative uncharacterized protein n=1 Tax=Eubacterium sp. 3_1_31 RepID=H1BM72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO83883.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
Phosphoribulokinase/uridine kinase
L3_128_000G1_scaffold_290_11
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10767..11117)
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KP06_CLOPH
Uncharacterized protein {ECO:0000313|EMBL:KEZ87687.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
hypothetical protein
L3_128_000G1_scaffold_290_12
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11240..11764
DNA (525bp) protein (175aa)
UPI0003150C8C related cluster n=1 Tax=unknown RepID=UPI0003150C8C
Nitroreductase family protein {ECO:0000313|EMBL:EDM98153.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Nitroreductase family protein
L3_128_000G1_scaffold_290_13
Fusobacterium varium, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

11751..12488
DNA (738bp) protein (246aa)
Methyltransferase domain protein n=1 Tax=Fusobacterium varium ATCC 27725 RepID=C6JN89_FUSVA
Methyltransferase domain protein {ECO:0000313|EMBL:EES62544.1}; TaxID=469618 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium varium ATCC 27725.;"
methylase involved in ubiquinone/menaquinone biosynthesis
L3_128_000G1_scaffold_290_14
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12536..15103)
DNA (2568bp) protein (856aa)
Putative translation elongation factor G n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C2A2_9FIRM
Putative translation elongation factor G {ECO:0000313|EMBL:EDS75044.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
small GTP-binding domain protein
L3_128_000G1_scaffold_290_15
unknown

Not on your lists

comp(15608..15736)
DNA (129bp) protein (43aa)

This feature has no annotations

L3_128_000G1_scaffold_290_16
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15794..15913)
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 8_2_54BFAA RepID=H1AKX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM88247.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
hypothetical protein
L3_128_000G1_scaffold_290_17
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16104..17597)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=2 Tax=Coprobacillus RepID=E7GA55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW05063.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
Na+/H+ antiporter NhaC
L3_128_000G1_scaffold_290_18
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17959..18912)
DNA (954bp) protein (318aa)
Trigger factor n=5 Tax=Erysipelotrichaceae RepID=B0N6A6_9FIRM
Trigger factor {ECO:0000256|RuleBase:RU003914}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
trigger factor
L3_128_000G1_scaffold_290_19
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19158..20267)
DNA (1110bp) protein (370aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase n=2 Tax=Firmicutes RepID=A8RFR5_9FIRM
L3_128_000G1_scaffold_290_20
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(20453..21139)
DNA (687bp) protein (229aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HV67_9FIRM
L3_128_000G1_scaffold_290_21
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21408..21716)
DNA (309bp) protein (103aa)
Efflux ABC transporter, permease protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C3U4_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDS74328.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
ABC transporter permease
L3_128_000G1_scaffold_290_22
Mageeibacillus indolicus, Mageeibacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21887..22252)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Clostridiales genomosp. BVAB3 (strain UPII9-5) RepID=E1PK73_CLOB3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADN43928.1}; TaxID=699246 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Mageeibacillus.;" source="Mageeibacillus indolicus (strain UPII9-5) (Clostridiales genomosp.; BVAB3 (strain UPII9-5)).;"
L3_128_000G1_scaffold_290_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22359..24572)
DNA (2214bp) protein (738aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CGQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO31639.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
superfamily II DNA/RNA helicase
L3_128_000G1_scaffold_290_24
Parvimonas sp. oral taxon 110, Parvimonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24566..25999)
DNA (1434bp) protein (478aa)
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Megasphaera sp. UPII 199-6 RepID=F5TIC7_9FIRM
DNA (Cytosine-5-)-methyltransferase {ECO:0000313|EMBL:EGL39111.1}; TaxID=767100 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Parvimonas.;" source="Parvimonas sp. oral taxon 110 str. F0139.;"
mod; DNA methyltransferase
L3_128_000G1_scaffold_290_25
unknown

Not on your lists

comp(26084..26236)
DNA (153bp) protein (51aa)

This feature has no annotations

L3_128_000G1_scaffold_290_26
Streptococcus infantis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26345..28036)
DNA (1692bp) protein (564aa)
Putative uncharacterized protein n=1 Tax=Streptococcus infantis SK970 RepID=F9PV52_9STRE
Putative uncharacterized protein {ECO:0000313|EMBL:EGV04681.1}; TaxID=1035189 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus infantis SK970.;"
hypothetical protein
L3_128_000G1_scaffold_290_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28095..30479)
DNA (2385bp) protein (795aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0N3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81801.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_128_000G1_scaffold_290_28
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30482..30772)
DNA (291bp) protein (97aa)
Helix-turn-helix protein n=1 Tax=Eubacterium cellulosolvens 6 RepID=I5AX78_EUBCE
Uncharacterized protein {ECO:0000313|EMBL:EOS24434.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
toxin-antitoxin system, antitoxin component, Xre family
L3_128_000G1_scaffold_290_29
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30837..32417)
DNA (1581bp) protein (527aa)
Resolvase, N-terminal domain protein n=2 Tax=Firmicutes RepID=B0MAZ1_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDR98666.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
Site-specific recombinase
L3_128_000G1_scaffold_290_30
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32399..34171)
DNA (1773bp) protein (591aa)
Resolvase protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CRC3_9CLOT
Resolvase protein {ECO:0000313|EMBL:CDA79313.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
site-specific recombinase
Displaying items 1-30 of 87 in total

View Taxonomy