ggKbase home page

L3_128_000G1_scaffold_291

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_291_1
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(552..1265)
DNA (714bp) protein (238aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC:2.3.1.51)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WR61_9FIRM
L3_128_000G1_scaffold_291_2
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1262..1813)
DNA (552bp) protein (184aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (EC:4.2.1.2)
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEQ8_CLOSV
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type {ECO:0000313|EMBL:EDS06946.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
L3_128_000G1_scaffold_291_3
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1816..2658)
DNA (843bp) protein (281aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region (EC:4.2.1.2)
Uncharacterized protein n=2 Tax=Dorea RepID=R6TJX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC59027.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
L3_128_000G1_scaffold_291_4
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2894..3355
DNA (462bp) protein (154aa)
C_GCAxxG_C_C family protein n=1 Tax=Dorea sp. 5-2 RepID=R9MMF0_9FIRM
C_GCAxxG_C_C family protein {ECO:0000313|EMBL:EOS72279.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
C-GCAxxG-C-C, Putative redox-active protein (C-GCAxxG-C-C)
L3_128_000G1_scaffold_291_5
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3380..4654
DNA (1275bp) protein (425aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N7J8_9FIRM
beta-glucosidase-related glycosidase
L3_128_000G1_scaffold_291_6
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4817..7312)
DNA (2496bp) protein (832aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=2 Tax=Clostridiales RepID=B0NEQ2_CLOSV
L3_128_000G1_scaffold_291_7
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7325..9259)
DNA (1935bp) protein (645aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MR17_9FIRM
L3_128_000G1_scaffold_291_8
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9270..10361)
DNA (1092bp) protein (364aa)
DNA replication and repair protein RecF n=2 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MHQ8_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
recF protein
L3_128_000G1_scaffold_291_9
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10351..10557)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BCB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81886.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
hypothetical protein
L3_128_000G1_scaffold_291_10
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10580..11689)
DNA (1110bp) protein (370aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=2 Tax=Clostridiales RepID=B0NEP8_CLOSV
L3_128_000G1_scaffold_291_11
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11981..13366)
DNA (1386bp) protein (462aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Dorea longicatena CAG:42 RepID=R7FUW0_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
chromosomal replication initiator protein DnaA
L3_128_000G1_scaffold_291_12
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13612..14223
DNA (612bp) protein (204aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=2 Tax=Clostridiales RepID=B0NEP4_CLOSV
L3_128_000G1_scaffold_291_13
Coprococcus eutactus CAG:665, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14236..14448
DNA (213bp) protein (71aa)
Putative membrane protein insertion efficiency factor n=2 Tax=Coprococcus RepID=A8SSB0_9FIRM
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1263071 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus eutactus CAG:665.;"
conserved hypothetical protein TIGR00278
L3_128_000G1_scaffold_291_14
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14481..15548
DNA (1068bp) protein (356aa)
Putative ATP synthase F0, A subunit n=2 Tax=Clostridiales RepID=B0NEP2_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN30906.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L3_128_000G1_scaffold_291_15
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15560..16387
DNA (828bp) protein (276aa)
R3H domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BGX8_9FIRM
R3H domain protein {ECO:0000313|EMBL:EDM62966.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Predicted RNA-binding protein
L3_128_000G1_scaffold_291_16
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16496..17905
DNA (1410bp) protein (470aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
tRNA modification GTPase MnmE n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEP0_CLOSV
tRNA modification GTPase trmE
L3_128_000G1_scaffold_291_17
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17871..19787
DNA (1917bp) protein (639aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Dorea sp. 5-2 RepID=R9MNS0_9FIRM
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
glucose-inhibited division protein A
L3_128_000G1_scaffold_291_18
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19855..20568
DNA (714bp) protein (238aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.- 2.1.-.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KPS8_9FIRM
L3_128_000G1_scaffold_291_19
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20763..21533
DNA (771bp) protein (257aa)
Sporulation initiation inhibitor protein Soj n=2 Tax=Clostridiales RepID=B0NEN6_CLOSV
Sporulation initiation inhibitor protein Soj {ECO:0000313|EMBL:EDS06924.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
ATPases involved in chromosome partitioning
L3_128_000G1_scaffold_291_20
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21566..22480
DNA (915bp) protein (305aa)
ParB-like protein n=2 Tax=Clostridiales RepID=B0NEN5_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN30899.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
ParB-like partition proteins
L3_128_000G1_scaffold_291_21
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22502..23038
DNA (537bp) protein (179aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NEN4_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS06922.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L3_128_000G1_scaffold_291_22
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23102..24388
DNA (1287bp) protein (429aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=2 Tax=Clostridiales RepID=B0NEN3_CLOSV
Seryl-tRNA synthetase {ECO:0000313|EMBL:EGN30897.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
L3_128_000G1_scaffold_291_23
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24424..25296
DNA (873bp) protein (291aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NEN2_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN30896.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L3_128_000G1_scaffold_291_24
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25764..26039
DNA (276bp) protein (92aa)
HIRAN domain protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZSG9_9FIRM
HIRAN domain protein {ECO:0000313|EMBL:EDM87381.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
HIRAN domain.
L3_128_000G1_scaffold_291_25
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26134..26292
DNA (159bp) protein (53aa)
Exonuclease n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G6N5_9FIRM
Exonuclease {ECO:0000313|EMBL:EDR46796.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
Inhibitor of the KinA pathway to sporulation, predicted exonuclease
L3_128_000G1_scaffold_291_26
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26282..26791
DNA (510bp) protein (170aa)
Exonuclease n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G6N5_9FIRM
Exonuclease {ECO:0000313|EMBL:EDR46796.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
Inhibitor of the KinA pathway to sporulation, predicted exonuclease
L3_128_000G1_scaffold_291_27
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26957..27940
DNA (984bp) protein (328aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LYJ0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL22693.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L3_128_000G1_scaffold_291_28
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28033..30429)
DNA (2397bp) protein (799aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82452.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
hypothetical protein
L3_128_000G1_scaffold_291_29
Bifidobacterium psychraerophilum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30737..33352
DNA (2616bp) protein (872aa)
endo-1,4-beta-xylanase n=1 Tax=Agromyces subbeticus RepID=UPI0003B35149
Uncharacterized protein {ECO:0000313|EMBL:KFI81149.1}; TaxID=218140 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium psychraerophilum.;"
hypothetical protein
L3_128_000G1_scaffold_291_30
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33451..33651)
DNA (201bp) protein (67aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9WD22_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ60396.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
Displaying items 1-30 of 81 in total

View Taxonomy