ggKbase home page

L3_128_000G1_scaffold_562

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_562_1
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2..910)
DNA (909bp) protein (303aa)
Stage III sporulation protein E n=1 Tax=Staphylococcus epidermidis NIHLM008 RepID=J1BTL3_STAEP
Cell division protein FtsK
DNA translocase FtsK {ECO:0000313|EMBL:ETJ13464.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_000G1_scaffold_562_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1176..2882)
DNA (1707bp) protein (569aa)
Ribonuclease J {ECO:0000256|PIRNR:PIRNR004803}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR004803};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Ribonuclease J n=36 Tax=Staphylococcus epidermidis RepID=V4QRT5_STAEP
metallo-beta-lactamase
L3_128_000G1_scaffold_562_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3217..5322)
DNA (2106bp) protein (702aa)
pnp; polynucleotide phosphorylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase {ECO:0000255|HAMAP-Rule:MF_01595};; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Polyribonucleotide nucleotidyltransferase n=49 Tax=Staphylococcus epidermidis RepID=PNP_STAEQ
L3_128_000G1_scaffold_562_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(5454..5723)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=75 Tax=Staphylococcus epidermidis RepID=RS15_STAEQ
SSU ribosomal protein S15p (S13e)
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L3_128_000G1_scaffold_562_5
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5843..6814)
DNA (972bp) protein (324aa)
Riboflavin kinase / FMN adenylyltransferase (EC:2.7.1.26)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Riboflavin biosynthesis protein RibF n=55 Tax=Staphylococcus epidermidis RepID=Q5HPR9_STAEQ
L3_128_000G1_scaffold_562_6
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6830..7747)
DNA (918bp) protein (306aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
truB; tRNA pseudouridine(55) synthase (EC:5.4.99.25)
tRNA pseudouridine synthase B n=24 Tax=Staphylococcus epidermidis RepID=D4FJI5_STAEP
L3_128_000G1_scaffold_562_7
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7885..8235)
DNA (351bp) protein (117aa)
Ribosome-binding factor A n=41 Tax=Staphylococcus epidermidis RepID=RBFA_STAEQ
Ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_000G1_scaffold_562_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8538..10700)
DNA (2163bp) protein (721aa)
Translation initiation factor IF-2 n=33 Tax=Staphylococcus epidermidis RepID=D4FJI7_STAEP
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Translation initiation factor 2
L3_128_000G1_scaffold_562_9
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10705..11022)
DNA (318bp) protein (106aa)
30S ribosomal protein L7Ae, putative n=52 Tax=Staphylococcus epidermidis RepID=Q5HPS3_STAEQ
50S ribosomal protein L7
Ribosomal protein L7/L12 {ECO:0000313|EMBL:ETJ09095.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_000G1_scaffold_562_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11022..11306)
DNA (285bp) protein (95aa)
Uncharacterized protein n=72 Tax=Staphylococcus epidermidis RepID=Q5HPS4_STAEQ
COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination
Uncharacterized protein {ECO:0000313|EMBL:AAW54195.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_000G1_scaffold_562_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11324..12547)
DNA (1224bp) protein (408aa)
Transcription termination factor NusA n=23 Tax=Staphylococcus epidermidis RepID=D4FJJ0_STAEP
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Transcription termination protein NusA
L3_128_000G1_scaffold_562_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12568..13035)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=43 Tax=Staphylococcus epidermidis RepID=RIMP_STAEQ
COG0779: clustered with transcription termination protein NusA
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_000G1_scaffold_562_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13214..17524)
DNA (4311bp) protein (1437aa)
DNA polymerase III alpha subunit (EC:2.7.7.7)
DNA polymerase III PolC-type {ECO:0000255|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000255|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000255|HAMAP-Rule:MF_00356};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
DNA polymerase III PolC-type n=6 Tax=Staphylococcus epidermidis RepID=DPO3_STAES
L3_128_000G1_scaffold_562_14
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17774..19477)
DNA (1704bp) protein (568aa)
Prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Proline--tRNA ligase n=45 Tax=Staphylococcus epidermidis RepID=SYP_STAEQ
L3_128_000G1_scaffold_562_15
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19496..20782)
DNA (1287bp) protein (429aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Membrane-associated zinc metalloprotease, putative n=55 Tax=Staphylococcus epidermidis RepID=Q5HPS9_STAEQ
Membrane-associated zinc metalloprotease
L3_128_000G1_scaffold_562_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21016..21798)
DNA (783bp) protein (261aa)
Phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
Phosphatidate cytidylyltransferase n=75 Tax=Staphylococcus epidermidis RepID=CDSA_STAEQ
L3_128_000G1_scaffold_562_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21802..22572)
DNA (771bp) protein (257aa)
uppS; di-trans,poly-cis-decaprenylcistransferase (EC:2.5.1.31)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Isoprenyl transferase n=47 Tax=Staphylococcus RepID=ISPT_STAEQ
L3_128_000G1_scaffold_562_18

Not on your lists

comp(22793..23347)
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=44 Tax=Staphylococcus epidermidis RepID=RRF_STAEQ
frr; ribosome recycling factor
Ribosome-recycling factor {ECO:0000313|EMBL:ETJ16239.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_000G1_scaffold_562_19

Not on your lists

comp(23364..24086)
DNA (723bp) protein (241aa)
Uridylate kinase (EC:2.7.4.-)
Uridylate kinase n=81 Tax=Staphylococcus RepID=PYRH_STAEQ
Uridylate kinase {ECO:0000313|EMBL:ETJ16240.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_000G1_scaffold_562_20

Not on your lists

comp(24227..25105)
DNA (879bp) protein (293aa)
Elongation factor Ts n=55 Tax=Staphylococcus epidermidis RepID=EFTS_STAEQ
Translation elongation factor Ts
Elongation factor Ts {ECO:0000313|EMBL:ETJ16241.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_000G1_scaffold_562_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(25257..26045)
DNA (789bp) protein (263aa)
30S ribosomal protein S2 n=67 Tax=Staphylococcus epidermidis RepID=RS2_STAEQ
SSU ribosomal protein S2p (SAe)
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_000G1_scaffold_562_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26408..27178)
DNA (771bp) protein (257aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=30 Tax=Staphylococcus epidermidis RepID=CODY_STAEQ
GTP-sensing transcriptional pleiotropic repressor codY
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000255|HAMAP-Rule:MF_00621}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_000G1_scaffold_562_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27202..28605)
DNA (1404bp) protein (468aa)
ATP-dependent protease ATPase subunit HslU n=47 Tax=Staphylococcus epidermidis RepID=HSLU_STAEQ
ATP-dependent hsl protease ATP-binding subunit HslU
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L3_128_000G1_scaffold_562_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28674..29216)
DNA (543bp) protein (181aa)
ATP-dependent protease HslV (EC:3.4.25.-)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
ATP-dependent protease subunit HslV n=55 Tax=Staphylococcus epidermidis RepID=HSLV_STAEQ
L3_128_000G1_scaffold_562_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29220..30110)
DNA (891bp) protein (297aa)
Tyrosine recombinase XerC n=65 Tax=Staphylococcus epidermidis RepID=XERC_STAEQ
xerC protein
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
L3_128_000G1_scaffold_562_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30335..31642)
DNA (1308bp) protein (436aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089759};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=40 Tax=Staphylococcus epidermidis RepID=TRMFO_STAEQ
tRNA:m(5)U-54 MTase gid
L3_128_000G1_scaffold_562_27
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31667..33736)
DNA (2070bp) protein (690aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
DNA topoisomerase 1 n=46 Tax=Staphylococcus epidermidis RepID=TOP1_STAEQ
L3_128_000G1_scaffold_562_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33919..34776)
DNA (858bp) protein (286aa)
DNA protecting protein DprA n=9 Tax=Staphylococcus epidermidis RepID=H3UH38_STAEP
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
DNA processing protein DprA, putative {ECO:0000313|EMBL:AAW54161.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_000G1_scaffold_562_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(35596..36504)
DNA (909bp) protein (303aa)
Succinyl-CoA ligase [ADP-forming] alpha chain (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Succinyl-CoA ligase [ADP-forming] subunit alpha n=62 Tax=Staphylococcus epidermidis RepID=SUCD_STAEQ
L3_128_000G1_scaffold_562_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(36526..37692)
DNA (1167bp) protein (389aa)
Succinyl-CoA ligase [ADP-forming] beta chain (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000255|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000255|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000255|HAMAP-Rule:MF_00558}; Short=SCS-beta {ECO:0000255|HAMAP-Rule:MF_00558};; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Succinyl-CoA ligase [ADP-forming] subunit beta n=62 Tax=Staphylococcus epidermidis RepID=SUCC_STAEQ
Displaying items 1-30 of 82 in total

View Taxonomy