ggKbase home page

L3_128_000G1_scaffold_934

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_934_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(119..1477)
DNA (1359bp) protein (453aa)
D-serine/D-alanine/glycine transporter n=38 Tax=Staphylococcus epidermidis RepID=Q8CNX2_STAES
D-serine/D-alanine/glycine transporter
Amino acid permease {ECO:0000313|EMBL:EFE59849.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_000G1_scaffold_934_2
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1698..2819
DNA (1122bp) protein (374aa)
Citrate synthase n=5 Tax=Staphylococcus epidermidis RepID=C5Q9U6_STAEP
citZ; citrate synthase II
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_000G1_scaffold_934_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2862..4130
DNA (1269bp) protein (423aa)
Isocitrate dehydrogenase [NADP] (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP]; Short=IDH;; EC=1.1.1.42;; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Isocitrate dehydrogenase [NADP] n=42 Tax=Staphylococcus epidermidis RepID=IDH_STAEQ
L3_128_000G1_scaffold_934_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4446..5156
DNA (711bp) protein (237aa)
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=76 Tax=Staphylococcus epidermidis RepID=Q5HNL2_STAEQ
Alkaline phosphatase synthesis transcriptional regulatory protein
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:AAW54628.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_000G1_scaffold_934_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5156..6853
DNA (1698bp) protein (566aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Phosphate regulon sensor protein PhoR (EC:2.7.3.-)
Alkaline phosphatase synthesis sensor protein n=36 Tax=Staphylococcus epidermidis RepID=Q8CNX6_STAES
L3_128_000G1_scaffold_934_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7067..9778
DNA (2712bp) protein (904aa)
DNA polymerase I n=2 Tax=Staphylococcus epidermidis RepID=V6QIB2_STAEP
DNA polymerase I
DNA polymerase I {ECO:0000313|EMBL:ESV20854.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
L3_128_000G1_scaffold_934_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9794..10666
DNA (873bp) protein (291aa)
Formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832};; EC=4.2.99.18 {ECO:0000256|SAAS:SAAS00054019};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Formamidopyrimidine-DNA glycosylase n=53 Tax=Staphylococcus RepID=Q5HNL5_STAEQ
L3_128_000G1_scaffold_934_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10682..11293
DNA (612bp) protein (204aa)
Dephospho-CoA kinase {ECO:0000255|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000255|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000255|HAMAP-Rule:MF_00376}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Dephospho-CoA kinase n=6 Tax=Staphylococcus epidermidis RepID=COAE_STAES
coaE; dephospho-CoA kinase
L3_128_000G1_scaffold_934_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11648..11764
DNA (117bp) protein (39aa)
Uncharacterized protein n=31 Tax=Staphylococcus epidermidis RepID=Q8CS71_STAES
hypothetical protein
IS1272, transposase {ECO:0000313|EMBL:EES35865.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L3_128_000G1_scaffold_934_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12137..13162
DNA (1026bp) protein (342aa)
Glyceraldehyde-3-phosphate dehydrogenase 2; Short=GAPDH 2;; EC=1.2.1.12;; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Glyceraldehyde-3-phosphate dehydrogenase 2 n=24 Tax=Staphylococcus epidermidis RepID=G3P2_STAEQ
gap; glyceraldehyde-3-phosphate dehydrogenase, type I
L3_128_000G1_scaffold_934_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13682..14152
DNA (471bp) protein (157aa)
Transcriptional repressor NrdR n=75 Tax=Staphylococcus epidermidis RepID=NRDR_STAEQ
Ribonucleotide reductase transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L3_128_000G1_scaffold_934_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14153..15523
DNA (1371bp) protein (457aa)
Replication initiation and membrane attachment protein n=38 Tax=Staphylococcus epidermidis RepID=Q5HNL9_STAEQ
Helicase loader DnaB
Replication initiation and membrane attachment protein, DnaB/DnaD family {ECO:0000313|EMBL:EFE59859.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_000G1_scaffold_934_13

Not on your lists

15523..16443
DNA (921bp) protein (307aa)
Primosomal protein DnaI n=46 Tax=Staphylococcus epidermidis RepID=Q5HNM0_STAEQ
Helicase loader DnaI
Primosomal protein DnaI {ECO:0000313|EMBL:ETJ18400.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_000G1_scaffold_934_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16795..18732
DNA (1938bp) protein (646aa)
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule:MF_00184};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=17 Tax=Staphylococcus epidermidis RepID=SYT_STAEQ
L3_128_000G1_scaffold_934_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19161..20663
DNA (1503bp) protein (501aa)
Amino acid permease family protein n=52 Tax=Staphylococcus epidermidis RepID=Q5HNM2_STAEQ
Lysine-specific permease
Amino acid permease {ECO:0000313|EMBL:EFE59862.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_000G1_scaffold_934_16

Not on your lists

20871..21398
DNA (528bp) protein (176aa)
Translation initiation factor IF-3 n=81 Tax=Staphylococcus epidermidis RepID=IF3_STAEQ
Translation initiation factor 3
Translation initiation factor IF-3 {ECO:0000313|EMBL:ETJ18397.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_000G1_scaffold_934_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


21426..21626
DNA (201bp) protein (67aa)
50S ribosomal protein L35 n=86 Tax=Staphylococcus RepID=RL35_STAEQ
LSU ribosomal protein L35p
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_000G1_scaffold_934_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


21678..22034
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=81 Tax=Staphylococcus epidermidis RepID=RL20_STAEQ
LSU ribosomal protein L20p
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_000G1_scaffold_934_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22452..23063
DNA (612bp) protein (204aa)
MutT/nudix family protein n=50 Tax=Staphylococcus epidermidis RepID=Q5HNM6_STAEQ
hypothetical protein
Hydrolase, NUDIX family {ECO:0000313|EMBL:EFE59866.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_000G1_scaffold_934_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23080..24003
DNA (924bp) protein (308aa)
Uncharacterized protein n=48 Tax=Staphylococcus epidermidis RepID=Q5HNM7_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE59867.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_000G1_scaffold_934_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24164..25465
DNA (1302bp) protein (434aa)
Cell division trigger factor (EC:5.2.1.8)
Trigger factor {ECO:0000255|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000255|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000255|HAMAP-Rule:MF_00303};; PPIase {ECO:0000255|HAMAP-Rule:MF_00303}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Trigger factor n=49 Tax=Staphylococcus epidermidis RepID=TIG_STAEQ
L3_128_000G1_scaffold_934_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25752..27014
DNA (1263bp) protein (421aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=54 Tax=Staphylococcus epidermidis RepID=CLPX_STAEQ
ATP-dependent Clp protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L3_128_000G1_scaffold_934_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27126..27713
DNA (588bp) protein (196aa)
Probable GTP-binding protein EngB n=48 Tax=Staphylococcus epidermidis RepID=ENGB_STAEQ
GTP-binding protein EngB
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321, ECO:0000256|SAAS:SAAS00023450}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_000G1_scaffold_934_24

Not on your lists

27883..29229
DNA (1347bp) protein (449aa)
Glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase n=25 Tax=Staphylococcus epidermidis RepID=HEM1_STAEQ
Glutamyl-tRNA reductase {ECO:0000313|EMBL:ETJ18389.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_000G1_scaffold_934_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29251..30063
DNA (813bp) protein (271aa)
HemA concentration negative effector n=41 Tax=Staphylococcus epidermidis RepID=Q8CNY7_STAES
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase
Cytochrome c assembly protein {ECO:0000313|EMBL:EFE59872.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_000G1_scaffold_934_26

Not on your lists

30117..31043
DNA (927bp) protein (309aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase n=49 Tax=Staphylococcus epidermidis RepID=HEM3_STAEQ
Porphobilinogen deaminase {ECO:0000313|EMBL:ETJ18387.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_000G1_scaffold_934_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

31077..31757
DNA (681bp) protein (227aa)
Uroporphyrinogen-III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:AAW54584.1}; EC=4.2.1.75 {ECO:0000313|EMBL:AAW54584.1};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Uroporphyrinogen-III synthase n=34 Tax=Staphylococcus RepID=Q5HNN4_STAEQ
L3_128_000G1_scaffold_934_28

Not on your lists

31747..32721
DNA (975bp) protein (325aa)
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=43 Tax=Staphylococcus epidermidis RepID=HEM2_STAEQ
Delta-aminolevulinic acid dehydratase {ECO:0000313|EMBL:ETJ18385.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_000G1_scaffold_934_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32742..34028
DNA (1287bp) protein (429aa)
Glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase 1 {ECO:0000255|HAMAP-Rule:MF_00375}; Short=GSA 1 {ECO:0000255|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000255|HAMAP-Rule:MF_00375};; Glutamate-1-semialdehyde aminotransferase 1 {ECO:0000255|HAMAP-Rule:MF_00375}; Short=GSA-AT 1 {ECO:0000255|HAMAP-Rule:MF_00375};; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Glutamate-1-semialdehyde 2,1-aminomutase 1 n=42 Tax=Staphylococcus epidermidis RepID=GSA1_STAEQ
L3_128_000G1_scaffold_934_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34484..35503
DNA (1020bp) protein (340aa)
Membrane protein, putative n=40 Tax=Staphylococcus epidermidis RepID=Q5HNN7_STAEQ
hypothetical protein
Putative membrane protein AbrB {ECO:0000313|EMBL:EFE59877.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Displaying items 1-30 of 77 in total

View Taxonomy