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L3_128_000G1_scaffold_3887

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_3887_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(106..1020)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens F262 RepID=H7CUD4_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EIA17656.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
hypothetical protein
L3_128_000G1_scaffold_3887_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1194..1733)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BM46_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDS79156.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L3_128_000G1_scaffold_3887_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1717..3951)
DNA (2235bp) protein (745aa)
Type III restriction enzyme, res subunit family n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BM47_CLOPF
Type III restriction enzyme, res subunit family {ECO:0000313|EMBL:EDS79070.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
helicase
L3_128_000G1_scaffold_3887_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4095..4325)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BM48_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDS79129.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L3_128_000G1_scaffold_3887_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4720..5313)
DNA (594bp) protein (198aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R9L7_CLOPF
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EDT23046.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
RNA polymerase sigma factor
L3_128_000G1_scaffold_3887_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5833..7626)
DNA (1794bp) protein (598aa)
Phage/plasmid primase domain, P4 family n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R9L6_CLOPF
Phage/plasmid primase domain, P4 family {ECO:0000313|EMBL:EDT23054.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
primase
L3_128_000G1_scaffold_3887_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7677..8522)
DNA (846bp) protein (282aa)
Phage/plasmid primase domain, P4 family n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R9L6_CLOPF
Phage/plasmid primase domain, P4 family {ECO:0000313|EMBL:EDT23054.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
primase
L3_128_000G1_scaffold_3887_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8700..10130)
DNA (1431bp) protein (477aa)
DNA-directed DNA polymerase n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R9L5_CLOPF
DNA-directed DNA polymerase {ECO:0000313|EMBL:EDT23072.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
polA; DNA polymerase i
L3_128_000G1_scaffold_3887_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10076..10390)
DNA (315bp) protein (105aa)
DNA-directed DNA polymerase n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R9L5_CLOPF
DNA-directed DNA polymerase {ECO:0000313|EMBL:EDT23072.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
DNA polymerase I family protein
L3_128_000G1_scaffold_3887_10
unknown

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11351..11440
DNA (90bp) protein (30aa)

This feature has no annotations

L3_128_000G1_scaffold_3887_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11605..11832
DNA (228bp) protein (76aa)
DNA-binding protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TSC3_CLOP1
DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:EDT70952.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
L3_128_000G1_scaffold_3887_12
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12651..15242)
DNA (2592bp) protein (864aa)
helicase n=1 Tax=Butyrivibrio sp. NC2007 RepID=UPI0003B45748
Helicase domain protein
Helicase domain protein {ECO:0000313|EMBL:CBH21757.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
L3_128_000G1_scaffold_3887_13
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15235..16449)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BV83_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR21059.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
L3_128_000G1_scaffold_3887_14
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16451..19165)
DNA (2715bp) protein (905aa)
RNA polymerase, alpha subunit domain protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BVI2_9CLOT
RNA polymerase, alpha subunit domain protein {ECO:0000313|EMBL:EOR21058.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
RNA polymerase subunit alpha
L3_128_000G1_scaffold_3887_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19211..20233)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TKL0_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD23559.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_128_000G1_scaffold_3887_16
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20358..21581)
DNA (1224bp) protein (408aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1443126 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. It1.;"
Cytosine-specific methyltransferase n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TSC7_CLOP1
dcm; DNA-cytosine methyltransferase
L3_128_000G1_scaffold_3887_17
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21883..23367
DNA (1485bp) protein (495aa)
Type II site-specific deoxyribonuclease n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TSC8_CLOP1
type II restriction endonuclease
Type II restriction endonuclease {ECO:0000313|EMBL:CDM68006.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_128_000G1_scaffold_3887_18
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23387..24703
DNA (1317bp) protein (439aa)
Type II restriction endonuclease {ECO:0000313|EMBL:CEO23164.1}; EC=3.1.21.4 {ECO:0000313|EMBL:CEO23164.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
DNA mismatch repair enzyme MutH family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VHA5_CLOBI
LLAKR2I restriction enzyme
L3_128_000G1_scaffold_3887_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24836..25135)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1RAL3_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT22724.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
hypothetical protein
L3_128_000G1_scaffold_3887_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25155..25355)
DNA (201bp) protein (67aa)
Putative membrane protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TSD2_CLOP1
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EDT16202.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Displaying 20 items

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