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L3_128_000G1_scaffold_1817

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_1817_1
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(2..154)
DNA (153bp) protein (51aa)
DNA-binding helix-turn-helix protein n=2 Tax=root RepID=U2EHL7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERT29182.1}; TaxID=1391469 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis BM4654.;"
L3_128_000G1_scaffold_1817_2
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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308..517
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WTL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX72087.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L3_128_000G1_scaffold_1817_3
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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456..1172
DNA (717bp) protein (239aa)
Response regulator receiver domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NYS9_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDM98578.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
transcriptional regulator
L3_128_000G1_scaffold_1817_4
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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1182..2417
DNA (1236bp) protein (412aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NYT0_9FIRM
integral membrane sensor signal transduction histidine kinase
L3_128_000G1_scaffold_1817_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2481..3164
DNA (684bp) protein (228aa)
phosphonate-transporting ATPase (EC:3.6.3.28)
ABC transporter ATP-binding protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YU23_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ11709.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
L3_128_000G1_scaffold_1817_6
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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3161..5494
DNA (2334bp) protein (778aa)
Efflux ABC transporter, permease protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NYT2_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDM98581.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_128_000G1_scaffold_1817_7
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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6081..6503
DNA (423bp) protein (141aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=4 Tax=Firmicutes RepID=D4MKZ5_9FIRM
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
Uncharacterized protein {ECO:0000313|EMBL:ERT29189.1}; TaxID=1391469 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis BM4654.;"
L3_128_000G1_scaffold_1817_8
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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6945..7214
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=root RepID=U7SDE7_ENTFL
Uncharacterized protein {ECO:0000313|EMBL:ERT29191.1}; TaxID=1391469 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis BM4654.;"
hypothetical protein
L3_128_000G1_scaffold_1817_9
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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7348..7524
DNA (177bp) protein (59aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=T4S2A1_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERT29192.1}; TaxID=1391469 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis BM4654.;"
L3_128_000G1_scaffold_1817_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7614..9122
DNA (1509bp) protein (503aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K542_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDP20505.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L3_128_000G1_scaffold_1817_11
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9259..9549
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8WDU4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ41347.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
TrpR-like protein YerC/YecD
L3_128_000G1_scaffold_1817_12
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9552..10298
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W926_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ41348.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
type 11 methyltransferase
L3_128_000G1_scaffold_1817_13
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10291..11166
DNA (876bp) protein (292aa)
33 kDa chaperonin n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W9G5_9CLOT
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
hslO; 33 kDa chaperonin
L3_128_000G1_scaffold_1817_14
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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12068..12523
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YF62_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13836.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_128_000G1_scaffold_1817_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

12625..13569
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XW28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13869.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_128_000G1_scaffold_1817_16
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13612..14529
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2D8J7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI77787.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_128_000G1_scaffold_1817_17
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14534..15307
DNA (774bp) protein (258aa)
Sortase n=2 Tax=Clostridiales RepID=H1CIA2_9FIRM
Sortase {ECO:0000313|EMBL:EHO29385.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_128_000G1_scaffold_1817_18
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15421..16002
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BI57_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI77789.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_128_000G1_scaffold_1817_19
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16081..21291
DNA (5211bp) protein (1737aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CIA4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO29387.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_128_000G1_scaffold_1817_20
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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21390..21746
DNA (357bp) protein (119aa)
Single-stranded DNA-binding protein n=3 Tax=Clostridiales RepID=G9YXI2_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ssb2; single-strand binding protein Ssb2
L3_128_000G1_scaffold_1817_21
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21746..22681
DNA (936bp) protein (312aa)
Putative uncharacterized protein n=3 Tax=Clostridiales RepID=H1CIA6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO29389.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_128_000G1_scaffold_1817_22
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

22674..23108
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZHG2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13860.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_128_000G1_scaffold_1817_23
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23105..23515
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NU87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN00434.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_128_000G1_scaffold_1817_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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23620..24558
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47957.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
plasmid segregation actin-type ATPase ParM
L3_128_000G1_scaffold_1817_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24551..24841
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CIB1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF51779.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_128_000G1_scaffold_1817_26
unknown

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comp(24817..25035)
DNA (219bp) protein (73aa)

This feature has no annotations

Displaying 26 items

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