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L3_128_000G1_scaffold_6

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Displaying items 1-30 of 306 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_6_1
Candidatus Methanomassiliicoccus intestinalis, Methanomassiliicoccus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

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comp(296..2551)
DNA (2256bp) protein (752aa)
Uncharacterized protein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TA28_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AGN26516.1}; TaxID=1295009 species="Archaea; Euryarchaeota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Methanomassiliicoccus.;" source="Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1.;"
hypothetical protein
L3_128_000G1_scaffold_6_2
Bacillus subtilis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2610..3095)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI000371AEEC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADM37980.1}; TaxID=655816 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472; / W23).;"
L3_128_000G1_scaffold_6_3
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3114..3929)
DNA (816bp) protein (272aa)
Eco47II restriction endonuclease. (EC:3.1.21.4)
Eco47II restriction endonuclease n=1 Tax=Clostridium leptum DSM 753 RepID=A7VX93_9CLOT
Eco47II restriction endonuclease {ECO:0000313|EMBL:EDO60390.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
L3_128_000G1_scaffold_6_4
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3926..5155)
DNA (1230bp) protein (410aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
DNA-methyltransferase (dcm) (EC:2.1.1.37)
Cytosine-specific methyltransferase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VX94_9CLOT
L3_128_000G1_scaffold_6_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6155..7342)
DNA (1188bp) protein (396aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF52819.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_128_000G1_scaffold_6_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7332..7667)
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF52818.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_128_000G1_scaffold_6_7
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7670..8743)
DNA (1074bp) protein (358aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO25563.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
site-specific recombinase XerD
L3_128_000G1_scaffold_6_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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9245..9733
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TSY3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF52815.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Helix-turn-helix.
L3_128_000G1_scaffold_6_9
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9931..11469)
DNA (1539bp) protein (513aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Clostridium sp. CAG:505 RepID=R7B9R1_9CLOT
L3_128_000G1_scaffold_6_10
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11484..12938)
DNA (1455bp) protein (485aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Coprococcus catus GD/7 RepID=D4J8T4_9FIRM
L3_128_000G1_scaffold_6_11
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13150..14724)
DNA (1575bp) protein (525aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PWR1_9FIRM
phosphoenolpyruvate carboxykinase
L3_128_000G1_scaffold_6_12
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15110..15997
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RLT6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC49868.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
cation diffusion facilitator family transporter
L3_128_000G1_scaffold_6_13
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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16099..17145
DNA (1047bp) protein (349aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7Y9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35283.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_128_000G1_scaffold_6_14
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17399..17854)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JHT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS33541.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
hypothetical protein
L3_128_000G1_scaffold_6_15
unknown

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comp(17968..18189)
DNA (222bp) protein (74aa)

This feature has no annotations

L3_128_000G1_scaffold_6_16
unknown

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comp(18146..18511)
DNA (366bp) protein (122aa)

This feature has no annotations

L3_128_000G1_scaffold_6_17
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18480..18890)
DNA (411bp) protein (137aa)
Transcriptional regulator PadR family n=1 Tax=Clostridium sp. CAG:505 RepID=R7BBM4_9CLOT
Transcriptional regulator PadR family {ECO:0000313|EMBL:CDD62155.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
PadR family transcriptional regulator
L3_128_000G1_scaffold_6_18
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19024..19854)
DNA (831bp) protein (277aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CH79_9FIRM
L3_128_000G1_scaffold_6_19
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19847..20359)
DNA (513bp) protein (171aa)
Protein ThiW n=1 Tax=Clostridium sp. M62/1 RepID=D4C7U6_9CLOT
Protein ThiW {ECO:0000313|EMBL:EFE14634.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
thiW protein
L3_128_000G1_scaffold_6_20
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20775..22703)
DNA (1929bp) protein (643aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
NAD-dependent DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZMN8_9CLOT
L3_128_000G1_scaffold_6_21
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(22710..24932)
DNA (2223bp) protein (741aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
ATP-dependent DNA helicase PcrA n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QRW2_9FIRM
L3_128_000G1_scaffold_6_22
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(24999..26030)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M6Z9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB99082.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
putative surface layer protein
L3_128_000G1_scaffold_6_23
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26076..26411)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZNF5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ15290.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
TrpR-like protein, YerC/YecD
L3_128_000G1_scaffold_6_24
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26535..27248)
DNA (714bp) protein (238aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R6Q1V2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD62334.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
putative hydrolase
L3_128_000G1_scaffold_6_25
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27261..27905)
DNA (645bp) protein (215aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
trmB; tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=2 Tax=Firmicutes RepID=R6PXZ4_9FIRM
L3_128_000G1_scaffold_6_26
unknown

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comp(27918..28190)
DNA (273bp) protein (91aa)

This feature has no annotations

L3_128_000G1_scaffold_6_27
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28400..28924)
DNA (525bp) protein (175aa)
BioY protein n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L6J5_9FIRM
BioY protein {ECO:0000313|EMBL:CCY72979.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
BioY protein
L3_128_000G1_scaffold_6_28
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28921..29871)
DNA (951bp) protein (317aa)
BirA bifunctional protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MRD7_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L3_128_000G1_scaffold_6_29
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(29967..32132)
DNA (2166bp) protein (722aa)
S-layer domain protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7AJH4_9CLOT
S-layer domain protein {ECO:0000313|EMBL:CDC29788.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
S-layer protein
L3_128_000G1_scaffold_6_30
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32568..33746
DNA (1179bp) protein (393aa)
Aminotransferase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HY78_9FIRM
Aminotransferase {ECO:0000313|EMBL:CDB42853.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
aspartate/tyrosine/aromatic aminotransferase
Displaying items 1-30 of 306 in total

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