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L3_128_000G1_scaffold_255

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_255_1
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

300..1181
DNA (882bp) protein (294aa)
DisA bacterial checkpoint controller nucleotide-binding protein n=2 Tax=Firmicutes RepID=R6PRU7_9FIRM
DisA bacterial checkpoint controller nucleotide-binding protein {ECO:0000313|EMBL:CDC27108.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
hypothetical protein
L3_128_000G1_scaffold_255_2
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

1168..2415
DNA (1248bp) protein (416aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R6Q8J9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC27106.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
hypothetical protein
L3_128_000G1_scaffold_255_3
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2471..2980
DNA (510bp) protein (170aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
lepB; signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Clostridium sp. ASF356 RepID=N1ZAC4_9CLOT
L3_128_000G1_scaffold_255_4
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3045..4610
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZJS0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ14000.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
peptidoglycan-binding LysM
L3_128_000G1_scaffold_255_5
unknown

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4696..5427
DNA (732bp) protein (244aa)

This feature has no annotations

L3_128_000G1_scaffold_255_6
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5551..6963
DNA (1413bp) protein (471aa)
PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MFU8_ALKOO
PAS modulated sigma54 specific transcriptional regulator
PAS modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ABW17737.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
L3_128_000G1_scaffold_255_7
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7269..7916
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZDV6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ15212.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
hypothetical protein
L3_128_000G1_scaffold_255_8
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8002..9678
DNA (1677bp) protein (559aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
Formate--tetrahydrofolate ligase n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0D2T2_CLOSO
formate--tetrahydrofolate ligase
L3_128_000G1_scaffold_255_9
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9699..10328
DNA (630bp) protein (210aa)
Formimidoyltetrahydrofolate cyclodeaminase (EC:3.5.4.9 4.3.1.4)
Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9XHI5_9CLOT
Methenyltetrahydrofolate cyclohydrolase {ECO:0000313|EMBL:ENZ49773.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
L3_128_000G1_scaffold_255_10
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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10319..11170
DNA (852bp) protein (284aa)
Bifunctional protein FolD n=1 Tax=Dorea sp. CAG:317 RepID=R6XNQ7_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
methylenetetrahydrofolate dehydrogenase
L3_128_000G1_scaffold_255_11
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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11341..12024
DNA (684bp) protein (228aa)
MgtC/SapB family protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KST1_OSCVS
MgtC/SapB family protein
MgtC/SapB family protein {ECO:0000313|EMBL:BAL00148.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_128_000G1_scaffold_255_12
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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12063..12611
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KAJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN40425.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
ADP-ribose pyrophosphatase
L3_128_000G1_scaffold_255_13
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12596..13771
DNA (1176bp) protein (392aa)
Alanyl-tRNA synthetase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HX12_9FIRM
Alanyl-tRNA synthetase {ECO:0000313|EMBL:CCY32684.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain
L3_128_000G1_scaffold_255_14
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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13758..14483
DNA (726bp) protein (242aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
aminoacyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6PTA9_9FIRM
L3_128_000G1_scaffold_255_15
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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14501..18004
DNA (3504bp) protein (1168aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
Transcription-repair-coupling factor n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6Q150_9FIRM
transcription-repair coupling factor
L3_128_000G1_scaffold_255_16
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18059..18772
DNA (714bp) protein (238aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
peptidyl-prolyl cis-trans isomerase PpiC-type (EC:5.2.1.8)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZGP8_9CLOT
L3_128_000G1_scaffold_255_17
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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18900..20027
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W611_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY98445.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
oxidoreductase of the aldo/keto reductase family
L3_128_000G1_scaffold_255_18
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20236..21462
DNA (1227bp) protein (409aa)
Basic membrane protein A n=9 Tax=Clostridium RepID=N9V889_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23860.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
nucleoside-binding protein
L3_128_000G1_scaffold_255_19
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21552..23081
DNA (1530bp) protein (510aa)
nucleoside ABC transporter ATP-binding protein (EC:3.6.3.17)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IPG2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42184.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_128_000G1_scaffold_255_20
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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23083..24204
DNA (1122bp) protein (374aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IJR5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI58285.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
nucleoside ABC transporter membrane protein
L3_128_000G1_scaffold_255_21
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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24208..25215
DNA (1008bp) protein (336aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IJR4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI58284.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
nucleoside ABC transporter membrane protein
L3_128_000G1_scaffold_255_22
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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25411..25803
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LDX1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY04962.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
hypothetical protein
L3_128_000G1_scaffold_255_23
Bacteroides cellulosilyticus CAG:158, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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25870..26670
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Bacteroides cellulosilyticus CL02T12C19 RepID=I9RAZ1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB70339.1}; TaxID=1263038 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides cellulosilyticus CAG:158.;"
metallo-beta-lactamase family protein
L3_128_000G1_scaffold_255_24
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26683..27933
DNA (1251bp) protein (417aa)
Amidohydrolase n=1 Tax=Clostridium sp. CAG:505 RepID=R7B741_9CLOT
Amidohydrolase {ECO:0000313|EMBL:CDD60977.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
amidohydrolase
L3_128_000G1_scaffold_255_25
Eggerthella sp. CAG:368, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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comp(27989..29296)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Eggerthella sp. CAG:368 RepID=R7BPC1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDD67327.1}; TaxID=1262877 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:368.;"
hypothetical protein
L3_128_000G1_scaffold_255_26
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(29373..30116)
DNA (744bp) protein (248aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H228_9FIRM
L3_128_000G1_scaffold_255_27
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30412..31668
DNA (1257bp) protein (419aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZFB0_9CLOT
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
L3_128_000G1_scaffold_255_28
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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31700..32494
DNA (795bp) protein (265aa)
Beta-lactamase domain protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5ABT8_9FIRM
Beta-lactamase domain protein {ECO:0000313|EMBL:CCX40138.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
metallo-beta-lactamase family protein
L3_128_000G1_scaffold_255_29
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32506..32985
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Eubacterium sp. CAG:274 RepID=R6PFY0_9FIRM
conserved hypothetical protein TIGR00246
L3_128_000G1_scaffold_255_30
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32997..34016
DNA (1020bp) protein (340aa)
Putative acyltransferase n=1 Tax=Clostridium sp. CAG:505 RepID=R7B9C8_9CLOT
Putative acyltransferase {ECO:0000313|EMBL:CDD61660.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
acyltransferase 3
Displaying items 1-30 of 79 in total

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