ggKbase home page

L3_128_000G1_scaffold_328

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_328_1
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(217..930)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6R6D3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC29917.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
colicin V production protein
L3_128_000G1_scaffold_328_2
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(954..2315)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZDW6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ12203.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
hypothetical protein
L3_128_000G1_scaffold_328_3
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2386..3351)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CMX9_9CLOT
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
L3_128_000G1_scaffold_328_4
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(3434..4876)
DNA (1443bp) protein (481aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
glycogen/starch synthase (EC:2.4.1.21)
Glycogen synthase n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QA25_9FIRM
L3_128_000G1_scaffold_328_5
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5076..6908
DNA (1833bp) protein (611aa)
Oligoendopeptidase F n=1 Tax=Clostridium sp. ASF356 RepID=N1ZEG7_9CLOT
Oligoendopeptidase F {ECO:0000313|EMBL:EMZ12205.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
oligopeptidase F
L3_128_000G1_scaffold_328_6
Clostridium sp. CAG:508, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7003..7491
DNA (489bp) protein (163aa)
Putative RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:508 RepID=R6R9G2_9CLOT
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:CDC31072.1}; TaxID=1262815 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:508.;"
Sigma-70 region 2
L3_128_000G1_scaffold_328_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7481..8248
DNA (768bp) protein (256aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9XER9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ13700.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_128_000G1_scaffold_328_8
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8353..9516)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZL86_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ14793.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
hypothetical protein
L3_128_000G1_scaffold_328_9
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9666..11096)
DNA (1431bp) protein (477aa)
Glucose-6-phosphate isomerase id=1818619 bin=GWD2_Clostridiales_32_19 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Clostridiales_32_19 organism_group=Firmicute organism_desc=a85
glucose-6-phosphate isomerase
Tax=BJP_IG2102_Clostridiales_34_350
L3_128_000G1_scaffold_328_10
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11308..12015)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7AK95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD61223.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
hypothetical protein
L3_128_000G1_scaffold_328_11
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12158..13018)
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W0X1_DESAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV63367.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
L3_128_000G1_scaffold_328_12
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13011..13487)
DNA (477bp) protein (159aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W0X0_DESAS
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACV63366.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
L3_128_000G1_scaffold_328_13
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13735..15654)
DNA (1920bp) protein (640aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Clostridium sp. CAG:505 RepID=R7B927_9CLOT
L3_128_000G1_scaffold_328_14
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15676..16164)
DNA (489bp) protein (163aa)
Transcription elongation factor GreA n=1 Tax=Clostridium sp. ASF356 RepID=N1ZC26_9CLOT
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
greA; transcription elongation factor GreA
L3_128_000G1_scaffold_328_15
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16324..17217)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1Z682_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ11331.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
L3_128_000G1_scaffold_328_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17235..18617)
DNA (1383bp) protein (461aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
glycyl-tRNA synthetase, dimeric type (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YVE2_9CLOT
L3_128_000G1_scaffold_328_17
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18895..19632)
DNA (738bp) protein (246aa)
DNA repair protein RecO n=7 Tax=Clostridium thermocellum RepID=RECO_CLOTH
DNA replication and repair protein RecO
DNA repair protein RecO {ECO:0000255|HAMAP-Rule:MF_00201}; Recombination protein O {ECO:0000255|HAMAP-Rule:MF_00201}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_128_000G1_scaffold_328_18
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19853..20755)
DNA (903bp) protein (301aa)
GTPase Era n=1 Tax=Clostridium sp. ASF356 RepID=N1ZBP3_9CLOT
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
GTP-binding protein Era
L3_128_000G1_scaffold_328_19
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20782..21333)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7B8P3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD60666.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
phage SPO1 DNA polymerase-like protein
L3_128_000G1_scaffold_328_20
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(21341..21811)
DNA (471bp) protein (157aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
Endoribonuclease YbeY n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5ABM3_9FIRM
hypothetical protein
L3_128_000G1_scaffold_328_21
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(21817..22803)
DNA (987bp) protein (329aa)
Phosphate starvation-inducible protein PhoH predicted ATPase n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AIT7_9FIRM
Phosphate starvation-inducible protein PhoH predicted ATPase {ECO:0000313|EMBL:CCX39276.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L3_128_000G1_scaffold_328_22
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22804..24018)
DNA (1215bp) protein (405aa)
Sporulation protein YqfD n=1 Tax=Clostridium sp. ASF356 RepID=N1ZB14_9CLOT
Sporulation protein YqfD {ECO:0000313|EMBL:EMZ11213.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
sporulation protein YqfD
L3_128_000G1_scaffold_328_23
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24035..24328)
DNA (294bp) protein (98aa)
Sporulation protein YqfC n=1 Tax=Clostridium termitidis CT1112 RepID=S0FK71_9CLOT
Sporulation protein YqfC {ECO:0000313|EMBL:EMS72222.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
hypothetical protein
L3_128_000G1_scaffold_328_24
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(24452..24898)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5ABN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX39284.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
hypothetical protein
L3_128_000G1_scaffold_328_25
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24926..25102)
DNA (177bp) protein (59aa)
30S ribosomal protein S21 n=1 Tax=Clostridium sp. ASF356 RepID=N1Z286_9CLOT
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
30S ribosomal protein S21
L3_128_000G1_scaffold_328_26
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(25260..27512)
DNA (2253bp) protein (751aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6PN82_9FIRM
1,4-alpha-glucan branching protein
L3_128_000G1_scaffold_328_27
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27792..28982)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036008F3
Uncharacterized protein {ECO:0000313|EMBL:CDB20740.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
hypothetical protein
L3_128_000G1_scaffold_328_28
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28979..29593)
DNA (615bp) protein (205aa)
RNA polymerase sigma factor sigma-70 family n=1 Tax=Blautia sp. CAG:52 RepID=R6GHG9_9FIRM
RNA polymerase sigma factor sigma-70 family {ECO:0000313|EMBL:CDB20741.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
RNA polymerase sigma factor, sigma-70 family
L3_128_000G1_scaffold_328_29
Catenibacterium sp. CAG:290, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(29675..30742)
DNA (1068bp) protein (356aa)
branched chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid transaminase n=2 Tax=Catenibacterium RepID=E2NW90_9FIRM
Branched-chain-amino-acid transaminase {ECO:0000313|EMBL:CDE28970.1}; TaxID=1262767 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium; environmental samples.;" source="Catenibacterium sp. CAG:290.;"
L3_128_000G1_scaffold_328_30
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31159..32445)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M9J6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS67321.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
Displaying items 1-30 of 78 in total

View Taxonomy