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L3_128_000G1_scaffold_1080

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_1080_1
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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249..1031
DNA (783bp) protein (261aa)
RND family efflux transporter Mfp n=1 Tax=Eubacterium sp. CAG:274 RepID=R6PP56_9FIRM
RND family efflux transporter Mfp {ECO:0000313|EMBL:CDC20236.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
putative Efflux transporter, RND family, MFP subunit precursor
L3_128_000G1_scaffold_1080_2
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1009..4116
DNA (3108bp) protein (1036aa)
Acriflavin resistance protein n=1 Tax=Eubacterium sp. CAG:274 RepID=R6PHE7_9FIRM
Acriflavin resistance protein {ECO:0000313|EMBL:CDC20234.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
acriflavin resistance protein
L3_128_000G1_scaffold_1080_3
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4161..4790
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:202 RepID=R6NVU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC01842.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
hypothetical protein
L3_128_000G1_scaffold_1080_4
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4844..6697)
DNA (1854bp) protein (618aa)
asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZLF8_9CLOT
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:EMZ14595.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
L3_128_000G1_scaffold_1080_5
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6710..7597)
DNA (888bp) protein (296aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
dapA; Dihydrodipicolinate synthase (EC:4.3.3.7)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF08_9CLOT
L3_128_000G1_scaffold_1080_6
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7972..9075
DNA (1104bp) protein (368aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SS95_CLOC7
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
L3_128_000G1_scaffold_1080_7
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9072..9716
DNA (645bp) protein (215aa)
Riboflavin synthase alpha chain n=1 Tax=Clostridium sp. CAG:75 RepID=R5SYM0_9CLOT
Riboflavin synthase alpha chain {ECO:0000313|EMBL:CCZ51716.1}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
riboflavin synthase subunit alpha
L3_128_000G1_scaffold_1080_8
Eubacterium saphenum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9740..10939
DNA (1200bp) protein (400aa)
ribAB; riboflavin biosynthesis protein RibAB (EC:3.5.4.25 4.1.99.12)
Riboflavin biosynthesis protein RibBA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H065_9FIRM
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=592031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium saphenum ATCC 49989.;"
L3_128_000G1_scaffold_1080_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10964..11425
DNA (462bp) protein (154aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.-)
6,7-dimethyl-8-ribityllumazine synthase n=2 Tax=Ruminococcus RepID=C6J8T8_9FIRM
L3_128_000G1_scaffold_1080_10
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11530..12504)
DNA (975bp) protein (325aa)
Electron transfer flavoprotein, alpha subunit n=5 Tax=Clostridiales RepID=D4MUW2_9FIRM
Electron transfer flavoprotein, alpha subunit
Electron transfer flavoprotein FAD-binding domain-containing protein {ECO:0000313|EMBL:CDA31813.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_128_000G1_scaffold_1080_11
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12523..13326)
DNA (804bp) protein (268aa)
Electron transfer flavoprotein, beta subunit n=1 Tax=Coprococcus catus GD/7 RepID=D4J7T0_9FIRM
Electron transfer flavoprotein, beta subunit
Electron transfer flavoprotein, beta subunit {ECO:0000313|EMBL:CBK80401.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L3_128_000G1_scaffold_1080_12
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13398..14534)
DNA (1137bp) protein (379aa)
Acyl-CoA dehydrogenases (EC:1.3.8.1)
Acyl-CoA dehydrogenases n=1 Tax=Clostridium sp. CAG:81 RepID=R5FYX1_9CLOT
Acyl-CoA dehydrogenases {ECO:0000313|EMBL:CCY10008.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_128_000G1_scaffold_1080_13
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14564..15985)
DNA (1422bp) protein (474aa)
FAD/FMN-containing dehydrogenases (EC:1.1.3.15)
FAD/FMN-containing dehydrogenases n=1 Tax=Clostridium sp. CAG:81 RepID=R5GB19_9CLOT
FAD/FMN-containing dehydrogenases {ECO:0000313|EMBL:CCY10007.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_128_000G1_scaffold_1080_14
Acetohalobium arabaticum, Acetohalobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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comp(16169..17293)
DNA (1125bp) protein (375aa)
Peptidase M23 n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QQJ1_ACEAZ
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:ADL12782.1}; TaxID=574087 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Acetohalobium.;" source="Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288).;"
L3_128_000G1_scaffold_1080_15
unknown

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17634..17987
DNA (354bp) protein (118aa)

This feature has no annotations

L3_128_000G1_scaffold_1080_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18085..18744
DNA (660bp) protein (220aa)
DNA-binding response regulator n=2 Tax=Clostridium butyricum RepID=B1QWI4_CLOBU
DNA-binding response regulator TctD {ECO:0000313|EMBL:EEP55779.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
cutR; transcriptional regulatory protein cutR
L3_128_000G1_scaffold_1080_17
Bacillus sp. B14905, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18746..19951
DNA (1206bp) protein (402aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=388400 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. B14905.;"
hypothetical protein n=1 Tax=Paenibacillus sp. OSY-SE RepID=UPI00037349FE
heavy metal sensor signal transduction histidine kinase
L3_128_000G1_scaffold_1080_18
Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

20035..20412
DNA (378bp) protein (126aa)
Uncharacterized protein n=2 Tax=Caldicellulosiruptor RepID=B9MRT6_CALBD
DRTGG domain-containing protein
DRTGG domain protein {ECO:0000313|EMBL:ADQ46267.1}; TaxID=632348 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 /; 2002).;"
L3_128_000G1_scaffold_1080_19
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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20391..20801
DNA (411bp) protein (137aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DPP5_CLOS4
RsbW; anti-sigma regulatory factor
Tax=BJP_IG2102_Clostridiales_34_350
L3_128_000G1_scaffold_1080_20
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20820..22181
DNA (1362bp) protein (454aa)
Fe-S cluster domain protein n=1 Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MQZ2_9THEO
Fe-S cluster domain-containing protein
Tax=BJP_IG2157_Clostridiales_35_16
L3_128_000G1_scaffold_1080_21
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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22159..22491
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8RBD4_THETN
hypothetical protein
AraC family transcriptional regulator {ECO:0000313|EMBL:ERM93004.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. yonseiensis KB-1.;"
L3_128_000G1_scaffold_1080_22
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

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22643..23314
DNA (672bp) protein (224aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5CUL8_9FIRM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:CCX71528.1}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
transcriptional regulator, Crp/Fnr family
L3_128_000G1_scaffold_1080_23
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23356..24366
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZCJ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ11748.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
putative lipoprotein
L3_128_000G1_scaffold_1080_24
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24341..25117
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZGP5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ11749.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
binding-protein-dependent transport system inner membrane protein
L3_128_000G1_scaffold_1080_25
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25114..25779
DNA (666bp) protein (222aa)
ABC transporter related n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8Q8_9FIRM
ABC transporter related {ECO:0000313|EMBL:CDB42874.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
nitrate ABC transporter ATP-binding protein
L3_128_000G1_scaffold_1080_26
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25878..27119
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZSH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ15294.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
integral membrane protein
L3_128_000G1_scaffold_1080_27
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27283..27714
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:248 RepID=R6JTZ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB66248.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:248.;"
hypothetical protein
L3_128_000G1_scaffold_1080_28
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27711..28436
DNA (726bp) protein (242aa)
Universal bacterial protein YeaZ n=1 Tax=Clostridium sp. ASF356 RepID=N1Z5M6_9CLOT
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EMZ11111.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
Inactive homolog of metal-dependent proteases, putative molecular chaperone
L3_128_000G1_scaffold_1080_29
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28424..28894
DNA (471bp) protein (157aa)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZBF7_9CLOT
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EMZ11110.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
ribosomal-protein-alanine acetyltransferase
L3_128_000G1_scaffold_1080_30
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28928..31372
DNA (2445bp) protein (815aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZEW2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ11109.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
putative ATP-dependent protease
Displaying items 1-30 of 35 in total

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