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L3_128_000G1_scaffold_1438

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_1438_1
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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2..952
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QE70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC29171.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
glutamine synthetase
L3_128_000G1_scaffold_1438_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(996..1565)
DNA (570bp) protein (190aa)
Hydrolase, nudix family n=1 Tax=Clostridium perfringens E str. JGS1987 PF2_CLOPF">RepID=B1BPF2_CLOPF
Hydrolase, nudix family {ECO:0000313|EMBL:EDT16404.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
NUDIX domain-containing protein
L3_128_000G1_scaffold_1438_3
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1579..2637)
DNA (1059bp) protein (353aa)
A/G-specific adenine glycosylase (EC:3.2.2.-)
A/G-specific adenine glycosylase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NIM4_9FIRM
A/G-specific adenine glycosylase {ECO:0000313|EMBL:CCY97196.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L3_128_000G1_scaffold_1438_4
Bilophila sp. 4_1_30, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2688..4253)
DNA (1566bp) protein (522aa)
Putative uncharacterized protein n=1 Tax=Bilophila sp. 4_1_30 RepID=G1V563_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW44535.1}; TaxID=693988 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila sp. 4_1_30.;"
L-serine dehydratase, iron-sulfur-dependent subunit alpha
L3_128_000G1_scaffold_1438_5
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4715..6790
DNA (2076bp) protein (692aa)
Translation elongation factor G n=1 Tax=Clostridium sp. ASF356 RepID=N1ZHC9_9CLOT
Translation elongation factor G {ECO:0000313|EMBL:EMZ15266.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
small GTP-binding protein
L3_128_000G1_scaffold_1438_6
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7103..8455
DNA (1353bp) protein (451aa)
Mate efflux family protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GMA3_EUBLK
mate efflux family protein
Mate efflux family protein {ECO:0000313|EMBL:ADO36731.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_128_000G1_scaffold_1438_7
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8683..9294
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y9X0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF67243.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_128_000G1_scaffold_1438_8
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9313..9525
DNA (213bp) protein (71aa)
UPF0291 protein C820_00542 n=1 Tax=Clostridium sp. ASF356 RepID=N1ZNH2_9CLOT
UPF0291 protein C820_00542 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
hypothetical protein
L3_128_000G1_scaffold_1438_9
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9561..9929)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZHX2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ12179.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
Mn-dependent transcriptional regulator
L3_128_000G1_scaffold_1438_10
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9996..10457)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000360A7B0
hypothetical protein
UPF0178 protein DCF50_p2242 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
L3_128_000G1_scaffold_1438_11
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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10709..11674
DNA (966bp) protein (322aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1408254 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus panacihumi W25.;"
Homoserine O-succinyltransferase n=1 Tax=Brevibacillus panacihumi W25 RepID=V6MFH6_9BACL
Homoserine O-succinyltransferase
L3_128_000G1_scaffold_1438_12
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12121..13212
DNA (1092bp) protein (364aa)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
gcvT; Aminomethyltransferase (EC:2.1.2.10)
Aminomethyltransferase n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CMD9_9CLOT
L3_128_000G1_scaffold_1438_13
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13233..13616
DNA (384bp) protein (128aa)
Glycine cleavage system H protein n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5TPY6_9CLOT
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
glycine cleavage system H protein
L3_128_000G1_scaffold_1438_14
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13630..14961
DNA (1332bp) protein (444aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; TaxID=583346 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain NBRC 12016).;"
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=2 Tax=Clostridium kluyveri RepID=A5N933_CLOK5
hypothetical protein
L3_128_000G1_scaffold_1438_15
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14945..16378
DNA (1434bp) protein (478aa)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00713};; Glycine cleavage system P-protein subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine decarboxylase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine dehydrogenase (aminomethyl-transferring) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
gcvPB; putative glycine dehydrogenase [decarboxylating] subunit 2 (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CTP8_9CLOT
L3_128_000G1_scaffold_1438_16
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16718..20158
DNA (3441bp) protein (1147aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
pyruvate carboxylase (EC:6.4.1.1)
Pyruvate carboxylase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZN86_9CLOT
L3_128_000G1_scaffold_1438_17
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20247..21080
DNA (834bp) protein (278aa)
ATPases involved in chromosome partitioning n=1 Tax=Coprococcus catus GD/7 RepID=D4J7X0_9FIRM
ATPases involved in chromosome partitioning
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:CBK80441.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L3_128_000G1_scaffold_1438_18
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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comp(21158..22150)
DNA (993bp) protein (331aa)
Predicted membrane protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QT83_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CDC25157.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
hypothetical protein
L3_128_000G1_scaffold_1438_19
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22327..23658
DNA (1332bp) protein (444aa)
CBS domain-containing protein n=2 Tax=Firmicutes RepID=R6PLB7_9FIRM
CBS domain-containing protein {ECO:0000313|EMBL:CDD62364.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
hypothetical protein
L3_128_000G1_scaffold_1438_20
unknown

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23642..23800
DNA (159bp) protein (53aa)

This feature has no annotations

L3_128_000G1_scaffold_1438_21
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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24020..25381
DNA (1362bp) protein (454aa)
Transporter n=1 Tax=Treponema socranskii subsp. paredis ATCC 35535 RepID=S3JH74_TRESO
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1125701 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. paredis ATCC 35535.;"
Na+-dependent transporters of the SNF family
L3_128_000G1_scaffold_1438_22
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25432..26064)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZI49_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ15506.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
hypothetical protein
L3_128_000G1_scaffold_1438_23
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26129..27391)
DNA (1263bp) protein (421aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LBQ5_9FIRM
L3_128_000G1_scaffold_1438_24
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27403..28503)
DNA (1101bp) protein (367aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZEW3_9CLOT
L3_128_000G1_scaffold_1438_25
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28764..30128
DNA (1365bp) protein (455aa)
TrkH family potassium uptake protein (EC:3.6.3.14)
Potassium uptake protein integral membrane component KtrB n=1 Tax=Eubacterium sp. CAG:274 RepID=R6P5J2_9FIRM
Potassium uptake protein integral membrane component KtrB {ECO:0000313|EMBL:CDC19588.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
Displaying 25 items

View Taxonomy