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L3_128_000G1_scaffold_202

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_000G1_scaffold_202_1
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..401)
DNA (399bp) protein (133aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Clostridium sp. ASF356 RepID=N1ZAI4_9CLOT
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EMZ11003.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
RND family efflux transporter MFP subunit
L3_128_000G1_scaffold_202_2
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(523..1734)
DNA (1212bp) protein (404aa)
Sodium/hydrogen exchanger n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JPQ4_CELLD
sodium/hydrogen exchanger
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ADZ83714.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_128_000G1_scaffold_202_3
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1971..2405
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=V2XZM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL02153.1}; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source="Catonella morbi ATCC 51271.;"
hypothetical protein
L3_128_000G1_scaffold_202_4
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2541..3233
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M3H4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65363.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_128_000G1_scaffold_202_5
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3249..4250
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9MBY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65362.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_128_000G1_scaffold_202_6
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4286..4816)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZJI5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ13930.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
nucleoside recognition domain-containing protein
L3_128_000G1_scaffold_202_7
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(4813..5388)
DNA (576bp) protein (192aa)
Nucleoside recognition domain protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QWW0_9FIRM
Nucleoside recognition domain protein {ECO:0000313|EMBL:CDC26452.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
Uncharacterized membrane protein, required for spore maturation in B.subtilis.
L3_128_000G1_scaffold_202_8
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5545..5802
DNA (258bp) protein (86aa)
Transcriptional regulator AbrB family n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5A9Q7_9FIRM
AbrB family transcriptional regulator {ECO:0000313|EMBL:EMZ13932.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
AbrB family transcriptional regulator
L3_128_000G1_scaffold_202_9
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5995..6798)
DNA (804bp) protein (268aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Clostridium sp. ASF356 RepID=N1Z2T1_9CLOT
L3_128_000G1_scaffold_202_10
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6817..7878)
DNA (1062bp) protein (354aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Eubacterium sp. CAG:274 RepID=R6P5I4_9FIRM
L3_128_000G1_scaffold_202_11
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8688..9908)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W0S0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ38423.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L3_128_000G1_scaffold_202_12
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(9927..10412)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5H9F2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY26108.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
L3_128_000G1_scaffold_202_13
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(10730..12235)
DNA (1506bp) protein (502aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
Lysine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6Q8W4_9FIRM
lysyl-tRNA synthetase
L3_128_000G1_scaffold_202_14
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12263..12739)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Clostridium sp. ASF356 RepID=N1ZC26_9CLOT
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
greA; transcription elongation factor GreA
L3_128_000G1_scaffold_202_15
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(12925..13884)
DNA (960bp) protein (320aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
tRNA-dihydrouridine synthase n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AF44_9FIRM
tRNA-U20-dihydrouridine synthase
L3_128_000G1_scaffold_202_16
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13943..14716)
DNA (774bp) protein (258aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZJT6_9CLOT
L3_128_000G1_scaffold_202_17
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(14793..15155)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6R4V5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC29347.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
hypothetical protein
L3_128_000G1_scaffold_202_18
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15160..16137)
DNA (978bp) protein (326aa)
biotin-(acetyl-CoA carboxylase) ligase (EC:6.3.4.15)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7B812_9CLOT
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
L3_128_000G1_scaffold_202_19
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16200..17147)
DNA (948bp) protein (316aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZDW4_9CLOT
L3_128_000G1_scaffold_202_20
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17174..17572)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZJT1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ14015.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
thioesterase
L3_128_000G1_scaffold_202_21
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17589..19487)
DNA (1899bp) protein (633aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium sp. ASF356 RepID=N1ZN88_9CLOT
L3_128_000G1_scaffold_202_22
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19832..20362)
DNA (531bp) protein (177aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZJ34_9CLOT
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EMZ14013.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
L3_128_000G1_scaffold_202_23
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20346..21743)
DNA (1398bp) protein (466aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
tRNA(Ile)-lysidine synthase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZAD5_9CLOT
tRNA(Ile)-lysidine synthetase
L3_128_000G1_scaffold_202_24
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21818..24202)
DNA (2385bp) protein (795aa)
Stage II sporulation protein E n=1 Tax=Clostridium sp. ASF356 RepID=N1ZAD1_9CLOT
Stage II sporulation protein E {ECO:0000313|EMBL:EMZ14007.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
stage II sporulation protein E
L3_128_000G1_scaffold_202_25
unknown

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comp(24327..24518)
DNA (192bp) protein (64aa)

This feature has no annotations

L3_128_000G1_scaffold_202_26
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24718..25884)
DNA (1167bp) protein (389aa)
Putative proton/amino acid symporter n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KT29_OSCVS
putative proton/amino acid symporter
Putative proton/amino acid symporter {ECO:0000313|EMBL:BAK97681.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_128_000G1_scaffold_202_27
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26001..27188)
DNA (1188bp) protein (396aa)
putative threonine dehydratase (EC:4.3.1.19)
Threonine ammonia-lyase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZAF7_9CLOT
Threonine ammonia-lyase {ECO:0000313|EMBL:EMZ10973.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
L3_128_000G1_scaffold_202_28
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27452..28120
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K2Y3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN39245.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_128_000G1_scaffold_202_29
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28152..28526)
DNA (375bp) protein (125aa)
Putative YjgF/YER057c/UK114 family protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TQV8_9FIRM
Putative YjgF/YER057c/UK114 family protein {ECO:0000313|EMBL:CDC72194.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
RutC family protein
L3_128_000G1_scaffold_202_30
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

29370..32915
DNA (3546bp) protein (1182aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH8_9FIRM
pyruvate:ferredoxin oxidoreductase
Displaying items 1-30 of 86 in total

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