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L3_128_007G1_scaffold_218

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_007G1_scaffold_218_1
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..280
DNA (279bp) protein (93aa)
50S ribosomal protein L10 n=1 Tax=Pectobacterium carotovorum subsp. carotovorum (strain PC1) RepID=RL10_PECCP
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
L3_128_007G1_scaffold_218_2
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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343..708
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=3 Tax=Serratia marcescens RepID=M3C5K4_SERMA
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368, ECO:0000313|EMBL:AIX75714.1}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
L3_128_007G1_scaffold_218_3
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1034..4975
DNA (3942bp) protein (1314aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:AIX75715.1}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:AIX75715.1};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Klebsiella pneumoniae KCTC 2242 RepID=G0GSV5_KLEPN
L3_128_007G1_scaffold_218_4
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5072..9295
DNA (4224bp) protein (1408aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000313|EMBL:AIX75716.1};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Pantoea stewartii subsp. stewartii DC283 RepID=H3RJ21_ERWST
L3_128_007G1_scaffold_218_5
Tatumella morbirosei, Tatumella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9379..10452
DNA (1074bp) protein (358aa)
UPI000399BC4D related cluster n=1 Tax=unknown RepID=UPI000399BC4D
Uncharacterized protein {ECO:0000313|EMBL:KGD69756.1}; TaxID=642227 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Tatumella.;" source="Tatumella morbirosei.;"
hypothetical protein
L3_128_007G1_scaffold_218_6
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10640..11767)
DNA (1128bp) protein (376aa)
Thiamine biosynthesis protein ThiH n=1 Tax=Salmonella enterica subsp. indica serovar 6,14,25:z10:1,(2),7 str. 1121 RepID=V1H0R9_SALCE
thiH; thiamine biosynthesis protein ThiH
Thiamine biosynthesis protein ThiH {ECO:0000313|EMBL:AIX75717.1}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
L3_128_007G1_scaffold_218_7
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11764..12543)
DNA (780bp) protein (260aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443, ECO:0000313|EMBL:AIX75718.1}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
Thiazole synthase n=1 Tax=Serratia marcescens EGD-HP20 RepID=U1VSE0_SERMA
thiazole synthase
L3_128_007G1_scaffold_218_8
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12545..12745)
DNA (201bp) protein (67aa)
Sulfur carrier protein ThiS n=1 Tax=Serratia liquefaciens ATCC 27592 RepID=S5ERL9_SERLI
thiamine biosynthesis protein ThiS
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:AIX75719.1}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
L3_128_007G1_scaffold_218_9
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12742..13491)
DNA (750bp) protein (250aa)
UBA/THIF-type NAD/FAD binding protein n=5 Tax=Serratia RepID=G0B1U0_SERSA
molybdopterin-synthase adenylyltransferase
Molybdopterin-synthase adenylyltransferase {ECO:0000313|EMBL:AIX75720.1}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
L3_128_007G1_scaffold_218_10
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13484..14125)
DNA (642bp) protein (214aa)
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
thiamine-phosphate pyrophosphorylase n=1 Tax=Pantoea sp. A4 RepID=UPI00036F50E6
L3_128_007G1_scaffold_218_11
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14122..16044)
DNA (1923bp) protein (641aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
Phosphomethylpyrimidine synthase n=1 Tax=Pantoea sp. AS-PWVM4 RepID=U2MUY7_9ENTR
thiamine biosynthesis protein ThiC
L3_128_007G1_scaffold_218_12
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16358..16864)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Erwinia toletana RepID=UPI0003463EEC
anti-RNA polymerase sigma 70 factor
Regulator of sigma D {ECO:0000256|HAMAP-Rule:MF_01181, ECO:0000256|SAAS:SAAS00010112}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
L3_128_007G1_scaffold_218_13
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17097..17684
DNA (588bp) protein (196aa)
NADH pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016168}; EC=3.6.1.22 {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016202};; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
NADH pyrophosphatase n=1 Tax=Erwinia toletana RepID=UPI000344E76C
nudC; NADH pyrophosphatase
L3_128_007G1_scaffold_218_14
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17786..18856
DNA (1071bp) protein (357aa)
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
Uroporphyrinogen decarboxylase n=1 Tax=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) RepID=DCUP_ERWT9
L3_128_007G1_scaffold_218_15
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18859..19524
DNA (666bp) protein (222aa)
endonuclease V (EC:3.1.21.7)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801, ECO:0000313|EMBL:AIX75725.1}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801, ECO:0000313|EMBL:AIX75725.1};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
endonuclease VIII n=1 Tax=Erwinia toletana RepID=UPI0003481634
L3_128_007G1_scaffold_218_16
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19587..20177
DNA (591bp) protein (197aa)
Uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=M9W5V2_RAOOR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIX75726.1}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
L3_128_007G1_scaffold_218_17
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20366..20638
DNA (273bp) protein (91aa)
Integration host factor subunit alpha (IHF-alpha) n=5 Tax=Pantoea RepID=E1SAT8_PANVC
DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:AIX75727.1}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
L3_128_007G1_scaffold_218_18
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20723..21367
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Erwinia toletana RepID=UPI00037FEA41
membrane protein
Membrane protein {ECO:0000313|EMBL:AIX75728.1}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
L3_128_007G1_scaffold_218_19
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21422..22702)
DNA (1281bp) protein (427aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:AIX75729.1}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:AIX75729.1};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
phosphoribosylamine--glycine ligase n=1 Tax=Erwinia toletana RepID=UPI00034680EB
L3_128_007G1_scaffold_218_20
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22721..24310)
DNA (1590bp) protein (530aa)
purH; phosphoribosylaminoimidazolecarboxamide formyltransferase (EC:2.1.2.3 3.5.4.10)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Pantoea sp. AS-PWVM4 RepID=U2LMJ2_9ENTR
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
Displaying 20 items

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