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L3_128_009G1_scaffold_3

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Displaying items 1-30 of 187 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_009G1_scaffold_3_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(117..1379)
DNA (1263bp) protein (421aa)
sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex (EC:2.3.1.61)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (Succinyl-transferring) complex n=2 Tax=Staphylococcus epidermidis RepID=H3W1D0_STAEP
L3_128_009G1_scaffold_3_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1398..4202)
DNA (2805bp) protein (935aa)
sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component (EC:1.2.4.2)
2-oxoglutarate dehydrogenase E1 component {ECO:0000256|HAMAP-Rule:MF_01169, ECO:0000256|SAAS:SAAS00010308}; EC=1.2.4.2 {ECO:0000256|HAMAP-Rule:MF_01169, ECO:0000256|SAAS:SAAS00010306};; Alpha-ketoglutarate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01169}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
2-oxoglutarate dehydrogenase E1 component n=1 Tax=Staphylococcus epidermidis VCU125 RepID=H3W1D1_STAEP
L3_128_009G1_scaffold_3_3
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4616..5986)
DNA (1371bp) protein (457aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Signal transduction histidine-protein kinase ArlS n=1 Tax=Staphylococcus epidermidis VCU125 RepID=H3W1D2_STAEP
HAMP domain protein
L3_128_009G1_scaffold_3_4
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5983..6642)
DNA (660bp) protein (220aa)
Response regulator ArlR n=47 Tax=Staphylococcus epidermidis RepID=ARLR_STAES
Putative response regulator ArlR
Response regulator ArlR {ECO:0000313|EMBL:ETJ10030.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_009G1_scaffold_3_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(7201..7968)
DNA (768bp) protein (256aa)
Uncharacterized HTH-type transcriptional regulator SE_1102 n=33 Tax=Staphylococcus epidermidis RepID=Y1102_STAES
deoR-like helix-turn-helix domain protein
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EFE59754.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_009G1_scaffold_3_6
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7975..9300)
DNA (1326bp) protein (442aa)
MATE domain protein n=14 Tax=Staphylococcus epidermidis RepID=H3UGP8_STAEP
matE family protein
MATE protein {ECO:0000313|EMBL:ETJ10032.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_009G1_scaffold_3_7
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9287..10141)
DNA (855bp) protein (285aa)
Phosphohydrolases, Icc family n=27 Tax=Staphylococcus epidermidis RepID=Q8CSL3_STAES
hypothetical protein
Metallophosphoesterase {ECO:0000313|EMBL:ETJ10033.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_009G1_scaffold_3_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(10155..11051)
DNA (897bp) protein (299aa)
Maltose/maltodextrin transport permease n=52 Tax=Staphylococcus epidermidis RepID=Q8CP81_STAES
binding--dependent transport system inner membrane component family protein
ABC transporter, permease protein {ECO:0000313|EMBL:EFE59751.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_009G1_scaffold_3_9
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(11067..12755)
DNA (1689bp) protein (563aa)
ABC transporter (Membrane spanning protein) n=26 Tax=Staphylococcus epidermidis RepID=Q8CMM4_STAES
bacterial extracellular solute-binding family protein
ABC transporter Membrane spanning protein {ECO:0000313|EMBL:ETJ10035.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_009G1_scaffold_3_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(12767..13723)
DNA (957bp) protein (319aa)
ABC transporter, permease protein n=35 Tax=Staphylococcus epidermidis RepID=F9LLV0_STAEP
Protein lplB {ECO:0000313|EMBL:ESV19447.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
binding--dependent transport system inner membrane component family protein
L3_128_009G1_scaffold_3_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13720..14811)
DNA (1092bp) protein (364aa)
Multiple sugar-binding transport ATP-binding protein n=32 Tax=Staphylococcus epidermidis RepID=Q8CSL2_STAES
ABC transporter family protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE59748.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_009G1_scaffold_3_12
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15162..15776)
DNA (615bp) protein (205aa)
Uncharacterized protein n=32 Tax=Staphylococcus epidermidis RepID=Q8CSL1_STAES
type 2 phosphatidic acid phosphatase family protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ10038.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_009G1_scaffold_3_13
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15789..16862)
DNA (1074bp) protein (358aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapepti de) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=32 Tax=Staphylococcus epidermidis RepID=MURG_STAEQ
L3_128_009G1_scaffold_3_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16880..17383)
DNA (504bp) protein (168aa)
Acetyltransferase, GNAT family n=41 Tax=Staphylococcus epidermidis RepID=Q5HPB9_STAEQ
Acetyltransferase (GNAT) family
Acetyltransferase, GNAT family {ECO:0000313|EMBL:AAW54356.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_009G1_scaffold_3_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17719..19194)
DNA (1476bp) protein (492aa)
Peptidase, S41 family {ECO:0000313|EMBL:EFE59744.1}; EC=3.4.21.- {ECO:0000313|EMBL:EFE59744.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Probable CtpA-like serine protease n=29 Tax=Staphylococcus epidermidis RepID=CTPAL_STAES
putative CtpA-like serine protease
L3_128_009G1_scaffold_3_16
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19539..19763)
DNA (225bp) protein (75aa)
UPF0346 protein SE_1114 n=61 Tax=Staphylococcus epidermidis RepID=Y1114_STAES
hypothetical protein
UPF0346 protein Q614_SASC00361G0026 {ECO:0000256|HAMAP-Rule:MF_01538}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_009G1_scaffold_3_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19763..20263)
DNA (501bp) protein (167aa)
PTS system, glucose-specific IIA component (EC:2.7.1.69)
Glucose-specific phosphotransferase enzyme IIA component; EC=2.7.1.-;; EIIA-Glc; EIII-Glc; PTS system glucose-specific EIIA component; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Glucose-specific phosphotransferase enzyme IIA component n=56 Tax=Staphylococcus RepID=PTGA_STAEQ
L3_128_009G1_scaffold_3_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20276..20704)
DNA (429bp) protein (143aa)
Peptide methionine sulfoxide reductase MsrB (EC:1.8.4.12)
Peptide methionine sulfoxide reductase MsrB {ECO:0000255|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000255|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000255|HAMAP-Rule:MF_01400}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Peptide methionine sulfoxide reductase MsrB n=51 Tax=Staphylococcus RepID=MSRB_STAEQ
L3_128_009G1_scaffold_3_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20701..21225)
DNA (525bp) protein (175aa)
methionine sulfoxide reductase A (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Peptide methionine sulfoxide reductase MsrA n=29 Tax=Staphylococcus epidermidis RepID=Q5HPB3_STAEQ
L3_128_009G1_scaffold_3_20
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21328..22176)
DNA (849bp) protein (283aa)
DegV family protein n=48 Tax=Staphylococcus RepID=Q5HPB2_STAEQ
Hypothetical protein DUF194, DegV family
DegV family protein family protein {ECO:0000313|EMBL:ETJ10046.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_009G1_scaffold_3_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22186..22671)
DNA (486bp) protein (162aa)
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase; Short=DHFR;; EC=1.5.1.3;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Dihydrofolate reductase n=44 Tax=Bacillales RepID=DYR_STAEQ
L3_128_009G1_scaffold_3_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22713..23669)
DNA (957bp) protein (319aa)
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008};; TaxID=1282 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis.;"
Thymidylate synthase n=141 Tax=Bacilli RepID=TYSY_STAEQ
L3_128_009G1_scaffold_3_23

Not on your lists

comp(23983..24645)
DNA (663bp) protein (221aa)
ABC transporter, ATP-binding protein n=25 Tax=Staphylococcus epidermidis RepID=C5Q969_STAEP
ABC transporter family protein
ABC superfamily ATP binding cassette transporter, binding protein {ECO:0000313|EMBL:ETJ18880.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_009G1_scaffold_3_24

Not on your lists

comp(24661..25710)
DNA (1050bp) protein (350aa)
Efflux ABC transporter, permease protein n=8 Tax=Staphylococcus epidermidis RepID=H3UHT1_STAEP
ABC transporter permease protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ18881.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_009G1_scaffold_3_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25922..26362)
DNA (441bp) protein (147aa)
PF06491 family protein n=5 Tax=Staphylococcus epidermidis RepID=H3V7M4_STAEP
Uncharacterized protein {ECO:0000313|EMBL:EFE59733.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
hypothetical protein
L3_128_009G1_scaffold_3_26

Not on your lists

comp(26411..26671)
DNA (261bp) protein (87aa)
Uncharacterized protein n=77 Tax=Staphylococcus epidermidis RepID=Q5HPA6_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ18883.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_009G1_scaffold_3_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26683..26877)
DNA (195bp) protein (65aa)
Uncharacterized protein n=41 Tax=Staphylococcus epidermidis RepID=Q5HPA5_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE59731.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_009G1_scaffold_3_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27128..27832
DNA (705bp) protein (235aa)
Membrane protein, putative n=52 Tax=Staphylococcus epidermidis RepID=Q5HPA4_STAEQ
Putative preQ0 transporter
Membrane protein, putative {ECO:0000313|EMBL:AAW54378.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_009G1_scaffold_3_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28157..28552
DNA (396bp) protein (132aa)
Cell wall enzyme EbsB, putative n=37 Tax=Staphylococcus epidermidis RepID=Q5HPA3_STAEQ
cell wall enzyme EbsB
Cell wall enzyme EbsB, putative {ECO:0000313|EMBL:AAW54379.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_009G1_scaffold_3_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28724..59275)
DNA (30552bp) protein (10184aa)
Putative type III secretion apparatus needle protein n=1 Tax=Staphylococcus epidermidis BCM-HMP0060 RepID=C5Q976_STAEP
Gram-positive signal peptide protein, YSIRK family {ECO:0000313|EMBL:EFE59728.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
ebh; cell wall associated fibronectin-binding protein
Displaying items 1-30 of 187 in total

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