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L3_128_043G1_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 268 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_043G1_scaffold_56_1
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

868..1692
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MW54_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY95985.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Hypothetical protein
L3_128_043G1_scaffold_56_2
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1795..2343)
DNA (549bp) protein (183aa)
Putative thiol peroxidase n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5N246_9BIFI
Putative thiol peroxidase {ECO:0000313|EMBL:CCY95984.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
putative thiol peroxidase
L3_128_043G1_scaffold_56_3
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2720..2887)
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R5MX25_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY95983.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Hypothetical protein
L3_128_043G1_scaffold_56_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2975..3820)
DNA (846bp) protein (282aa)
Hydrolase of the HAD superfamily protein {ECO:0000313|EMBL:KFI70024.1}; EC=5.2.1.8 {ECO:0000313|EMBL:KFI70024.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Hydrolase of the HAD superfamily protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NFT3_9BIFI
Hydrolase (HAD superfamily)
L3_128_043G1_scaffold_56_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3918..4766)
DNA (849bp) protein (283aa)
ABC transporter ATP-binding component n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GRX7_BIFLS
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACJ52557.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
L3_128_043G1_scaffold_56_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4917..6167)
DNA (1251bp) protein (417aa)
Putative glycosyltransferase n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MTG2_BIFL1
glycosyltransferase
Glycosyl transferase family 1 {ECO:0000313|EMBL:AIW43732.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_128_043G1_scaffold_56_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6296..6760)
DNA (465bp) protein (155aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=B3DS90_BIFLD
putative membrane spanning protein
Uncharacterized protein {ECO:0000313|EMBL:EEI81519.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_128_043G1_scaffold_56_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6868..8763)
DNA (1896bp) protein (632aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=U2CVU2_BIFBR
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI88163.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L3_128_043G1_scaffold_56_9
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8923..10566)
DNA (1644bp) protein (548aa)
ABC-type oligopeptide transport system n=2 Tax=Bifidobacterium RepID=H3L2R2_BIFBR
ABC-type oligopeptide transport system {ECO:0000313|EMBL:CCY95976.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Solute binding protein of ABC transporter system for peptides
L3_128_043G1_scaffold_56_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10755..12290)
DNA (1536bp) protein (512aa)
Glutamate synthase, NADH/NADPH, small subunit n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZEG8_BIFBR
Glutamate synthase, NADH/NADPH, small subunit {ECO:0000313|EMBL:EPD75138.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Glutamate synthase [NADPH] small chain
L3_128_043G1_scaffold_56_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12292..16863)
DNA (4572bp) protein (1524aa)
Glutamate synthase (Ferredoxin) n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU26_BIFLJ
Glutamate synthase (Ferredoxin) {ECO:0000313|EMBL:ADH00381.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
glutamate synthase
L3_128_043G1_scaffold_56_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17307..17744
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU24_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH00380.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_56_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17796..18821)
DNA (1026bp) protein (342aa)
Dihydrodipicolinate reductase-like protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU23_BIFLJ
dihydrodipicolinate reductase-like protein
Dihydrodipicolinate reductase-like protein {ECO:0000313|EMBL:KFI70015.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_128_043G1_scaffold_56_14
unknown

Not on your lists

comp(19322..19423)
DNA (102bp) protein (34aa)

This feature has no annotations

L3_128_043G1_scaffold_56_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19700..20098)
DNA (399bp) protein (133aa)
Efflux-type transporter n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU22_BIFLJ
hypothetical protein
Efflux-type transporter {ECO:0000313|EMBL:ADH00378.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_56_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20438..21484)
DNA (1047bp) protein (349aa)
Regulatory protein, LacI n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU21_BIFLJ
regulatory protein LacI
Regulatory protein LacI {ECO:0000313|EMBL:KFI70013.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_128_043G1_scaffold_56_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22073..23026
DNA (954bp) protein (318aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU20_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH00376.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_56_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23386..23514
DNA (129bp) protein (43aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU19_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH00375.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_56_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23617..23745
DNA (129bp) protein (43aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU18_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI70010.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_128_043G1_scaffold_56_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24040..25491)
DNA (1452bp) protein (484aa)
Glycerate kinase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU16_BIFLJ
glycerate kinase
Glycerate kinase {ECO:0000313|EMBL:ADH00372.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_56_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25687..26226
DNA (540bp) protein (180aa)
Regulatory protein, LacI n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU15_BIFLJ
regulatory protein LacI
Regulatory protein, LacI {ECO:0000313|EMBL:ADH00371.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_56_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26198..26722
DNA (525bp) protein (175aa)
Regulatory protein, LacI n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU15_BIFLJ
regulatory protein LacI
Regulatory protein, LacI {ECO:0000313|EMBL:ADH00371.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_56_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26801..28231)
DNA (1431bp) protein (477aa)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU14_BIFLJ
putative oxygen-independent coproporphyrinogen III oxidase
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:ADH00370.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_56_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28231..30111)
DNA (1881bp) protein (627aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Elongation factor 4 n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=LEPA_BIFLS
GTP-binding protein LepA
L3_128_043G1_scaffold_56_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


30258..30518
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=17 Tax=Bifidobacterium RepID=RS20_BIFLD
rpsT; rpst
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_128_043G1_scaffold_56_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30770..31561)
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU10_BIFLJ
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:ADH00366.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_56_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32353..33480)
DNA (1128bp) protein (376aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KFI70003.1}; EC=2.6.1.42 {ECO:0000313|EMBL:KFI70003.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Branched-chain amino acid aminotransferase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU08_BIFLJ
branched-chain amino acid aminotransferase
L3_128_043G1_scaffold_56_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(33704..34327)
DNA (624bp) protein (208aa)
50S ribosomal protein L25 n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=RL25_BIFLS
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
50S ribosomal protein L25/general stress protein Ctc
L3_128_043G1_scaffold_56_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34755..35792
DNA (1038bp) protein (346aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU06_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH00362.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_56_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35839..37263)
DNA (1425bp) protein (475aa)
NAD/NADP transhydrogenase beta subunit (EC:1.6.1.2)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
NAD(P) transhydrogenase subunit beta n=5 Tax=Bifidobacterium longum subsp. longum RepID=D6D8U4_BIFLN
Displaying items 1-30 of 268 in total

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