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L3_128_043G1_scaffold_68

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_043G1_scaffold_68_1
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..90
DNA (90bp) protein (30aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZK81_BIFBR
transposase
Integrase core domain-containing protein {ECO:0000313|EMBL:EFV36343.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L3_128_043G1_scaffold_68_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

665..1132
DNA (468bp) protein (156aa)
Ribosome-associated protein Y n=12 Tax=Bifidobacterium RepID=B3DR88_BIFLD
30S ribosomal protein S30 {ECO:0000313|EMBL:KEY26546.1}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
hypothetical protein
L3_128_043G1_scaffold_68_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1294..4176
DNA (2883bp) protein (961aa)
Protein translocase subunit SecA n=6 Tax=Bifidobacterium RepID=D6ZUS7_BIFLJ
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
preprotein translocase subunit SecA
L3_128_043G1_scaffold_68_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4453..4827)
DNA (375bp) protein (125aa)
Transposase n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R2E7_BIFLM
transposase
Uncharacterized protein {ECO:0000313|EMBL:CBK70363.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_128_043G1_scaffold_68_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4852..5301)
DNA (450bp) protein (150aa)
Transposase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUS6_BIFLJ
transposase
Transposase {ECO:0000313|EMBL:ADH00632.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_68_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5327..5506)
DNA (180bp) protein (60aa)
Uncharacterized protein n=10 Tax=Bifidobacterium RepID=B3DR91_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ29488.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_128_043G1_scaffold_68_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5891..6937
DNA (1047bp) protein (349aa)
anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Anthranilate phosphoribosyltransferase n=7 Tax=Bifidobacterium RepID=D6DCZ4_BIFLN
L3_128_043G1_scaffold_68_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7178..7873)
DNA (696bp) protein (232aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=I3BDU4_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI71110.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_128_043G1_scaffold_68_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7934..8638
DNA (705bp) protein (235aa)
Acyltransferase n=6 Tax=Bifidobacterium RepID=E5XY11_9BIFI
acyltransferase
Acyltransferase {ECO:0000313|EMBL:EIJ29542.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_128_043G1_scaffold_68_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8679..10061)
DNA (1383bp) protein (461aa)
Serine-threonine protein kinase {ECO:0000313|EMBL:KFI71112.1}; EC=2.7.11.1 {ECO:0000313|EMBL:KFI71112.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Probable serine/threonine-protein kinase pknA2 n=4 Tax=Bifidobacterium longum RepID=PKNA2_BIFLO
serine-threonine protein kinase
L3_128_043G1_scaffold_68_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10075..10797)
DNA (723bp) protein (241aa)
Protein kinase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUS2_BIFLJ
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:KEY26540.1}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
L3_128_043G1_scaffold_68_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10941..12023)
DNA (1083bp) protein (361aa)
Polyprenyl synthetase {ECO:0000313|EMBL:KFI71113.1}; EC=2.5.1.90 {ECO:0000313|EMBL:KFI71113.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Polyprenyl synthetase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUS1_BIFLJ
polyprenyl synthetase
L3_128_043G1_scaffold_68_13
unknown

Not on your lists

comp(12026..12679)
DNA (654bp) protein (218aa)

This feature has no annotations

L3_128_043G1_scaffold_68_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13093..14514
DNA (1422bp) protein (474aa)
RNA polymerase sigma factor SigA n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUR9_BIFLJ
RNA polymerase sigma factor
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_68_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14572..16887
DNA (2316bp) protein (772aa)
DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUR8_BIFLJ
DNA topoisomerase
DNA gyrase subunit B {ECO:0000313|EMBL:KEY26536.1}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
L3_128_043G1_scaffold_68_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17054..18280
DNA (1227bp) protein (409aa)
Major facilitator superfamily MFS_1 n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUR7_BIFLJ
MFS transporter {ECO:0000313|EMBL:KEY25522.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
major facilitator superfamily protein
L3_128_043G1_scaffold_68_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18324..19316
DNA (993bp) protein (331aa)
Putative ribokinase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=E8MRE5_BIFLS
sugar kinase
Sugar kinase {ECO:0000313|EMBL:KEY25521.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_128_043G1_scaffold_68_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19332..24065
DNA (4734bp) protein (1578aa)
ATP-dependent helicase Lhr n=1 Tax=Bifidobacterium longum E18 RepID=V6XZ06_BIFLN
ATP-dependent helicase {ECO:0000313|EMBL:KEY25520.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
ATP-dependent helicase
L3_128_043G1_scaffold_68_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24073..24861)
DNA (789bp) protein (263aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUR4_BIFLJ
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADH00620.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_043G1_scaffold_68_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25008..27734)
DNA (2727bp) protein (909aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954, ECO:0000313|EMBL:CBK70376.1};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
DNA topoisomerase IV subunit A (EC:5.99.1.3)
DNA topoisomerase IV subunit A n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6DD05_BIFLN
L3_128_043G1_scaffold_68_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28006..29253
DNA (1248bp) protein (416aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUR2_BIFLJ
Nucleotide pyrophosphatase {ECO:0000313|EMBL:KEY31387.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
type I phosphodiesterase/nucleotide pyrophosphatase
L3_128_043G1_scaffold_68_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29263..30354)
DNA (1092bp) protein (364aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUR1_BIFLJ
Uncharacterized protein {ECO:0000313|EMBL:KEY31386.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
hypothetical protein
L3_128_043G1_scaffold_68_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30513..30806
DNA (294bp) protein (98aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=Q8G4E9_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW43862.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_128_043G1_scaffold_68_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30806..31282
DNA (477bp) protein (159aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1682 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=DUT_BIFLS
L3_128_043G1_scaffold_68_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31416..33740
DNA (2325bp) protein (775aa)
RelA/SpoT family protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GYK3_BIFLN
RelA/SpoT family protein {ECO:0000313|EMBL:EEI79828.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
GTP pyrophosphokinase
L3_128_043G1_scaffold_68_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33922..34491)
DNA (570bp) protein (190aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=6 Tax=Bifidobacterium RepID=B3DRC1_BIFLD
L3_128_043G1_scaffold_68_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34534..35502)
DNA (969bp) protein (323aa)
Uncharacterized protein n=8 Tax=Bifidobacterium longum RepID=B3DRC2_BIFLD
Uncharacterized protein {ECO:0000313|EMBL:KFI71131.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L3_128_043G1_scaffold_68_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35722..36426)
DNA (705bp) protein (235aa)
Uncharacterized protein n=5 Tax=Bifidobacterium breve RepID=S3AGQ7_BIFBR
Nitroreductase family protein {ECO:0000313|EMBL:KFI71132.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Hypothetical protein
L3_128_043G1_scaffold_68_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36528..37463)
DNA (936bp) protein (312aa)
Widely conserved hypothetical transmembrane protein with duf6 n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NDG0_9BIFI
EamA-like transporter family {ECO:0000313|EMBL:KFI71133.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
EamA-like transporter family.
L3_128_043G1_scaffold_68_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37742..38146
DNA (405bp) protein (135aa)
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein n=3 Tax=Bifidobacterium longum subsp. longum RepID=D6ZUN7_BIFLJ
flavin-nucleotide-binding protein
Pyridoxamine 5'-phosphate oxidase family protein {ECO:0000313|EMBL:EIJ28803.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
Displaying items 1-30 of 79 in total

View Taxonomy