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L3_128_043G1_scaffold_93

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_043G1_scaffold_93_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(116..1105)
DNA (990bp) protein (330aa)
Transcriptional regulator, putative n=54 Tax=Staphylococcus epidermidis RepID=Q5HPH9_STAEQ
Peptide methionine sulfoxide reductase regulator MsrR
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EFE59344.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_93_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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1241..1756
DNA (516bp) protein (172aa)
methionine sulfoxide reductase A (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Peptide methionine sulfoxide reductase MsrA n=24 Tax=Staphylococcus epidermidis RepID=Q8CPB9_STAES
L3_128_043G1_scaffold_93_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1950..4472)
DNA (2523bp) protein (841aa)
Phosphatidylglycerol lysyltransferase; EC=2.3.2.3;; Lysylphosphatidylglycerol synthase; Short=LPG synthase;; Multiple peptide resistance factor; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Phosphatidylglycerol lysyltransferase n=20 Tax=Staphylococcus epidermidis RepID=MPRF_STAES
oxacillin resistance-related FmtC protein
L3_128_043G1_scaffold_93_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4726..5943)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=11 Tax=Staphylococcus epidermidis RepID=I0TUA0_STAEP
UPF0118 membrane protein YrrI
Uncharacterized protein {ECO:0000313|EMBL:EES36086.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L3_128_043G1_scaffold_93_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(6089..7090)
DNA (1002bp) protein (334aa)
Protein GlcT n=1 Tax=Staphylococcus epidermidis BVS058A4 RepID=K8PEI1_STAEP
PRD domain protein {ECO:0000313|EMBL:EFE59348.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Transcription antiterminator
L3_128_043G1_scaffold_93_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(7132..8589)
DNA (1458bp) protein (486aa)
Amino acid carrier protein n=39 Tax=Staphylococcus epidermidis RepID=Q5HPI4_STAEQ
Sodium:alanine symporter family protein
Amino acid carrier protein {ECO:0000313|EMBL:EFE59349.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_93_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8801..11203)
DNA (2403bp) protein (801aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00937}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00937};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00937}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
DNA topoisomerase 4 subunit A n=24 Tax=Staphylococcus RepID=PARC_STAEQ
parC; DNA topoisomerase IV, A subunit
L3_128_043G1_scaffold_93_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11200..13194)
DNA (1995bp) protein (665aa)
Topoisomerase IV subunit B (EC:5.99.1.-)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00939}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00939};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00939}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
DNA topoisomerase 4 subunit B n=29 Tax=Staphylococcus epidermidis RepID=PARE_STAEQ
L3_128_043G1_scaffold_93_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13404..14012
DNA (609bp) protein (203aa)
Glycerol-3-phosphate acyltransferase n=66 Tax=Staphylococcus epidermidis RepID=PLSY_STAEQ
plsY; acyl-phosphate glycerol 3-phosphate acyltransferase
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L3_128_043G1_scaffold_93_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14256..14552
DNA (297bp) protein (99aa)
Uncharacterized protein SE_1034 n=49 Tax=Staphylococcus epidermidis RepID=Y1034_STAES
hypothetical protein
Uncharacterized protein SERP0923; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_043G1_scaffold_93_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14603..15070)
DNA (468bp) protein (156aa)
Acyl-CoA thioester hydrolase, YbgC/YbaW family n=8 Tax=Staphylococcus epidermidis RepID=H3VCM5_STAEP
thioesterase
Thioesterase family protein {ECO:0000313|EMBL:AAW54304.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_043G1_scaffold_93_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15193..17898)
DNA (2706bp) protein (902aa)
aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase A {ECO:0000250|UniProtKB:Q8ZP52}; Short=ACN {ECO:0000250|UniProtKB:Q8ZP52};; Short=Aconitase {ECO:0000250|UniProtKB:Q8ZP52};; EC=4.2.1.3 {ECO:0000250|UniProtKB:Q8ZP52};; (2R,3S)-2-methylisocitrate dehydratase {ECO:0000250|UniProtKB:Q8ZP52}; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase {ECO:0000250|UniProtKB:Q8ZP52}; Iron-responsive protein-like {ECO:0000250|UniProtKB:P09339}; Short=IRP-like {ECO:0000250|UniProtKB:P09339};; Probable 2-methyl-cis-aconitate hydratase {ECO:0000250|UniProtKB:Q8ZP52}; EC=4.2.1.99 {ECO:0000250|UniProtKB:Q8ZP52};; RNA-binding protein {ECO:0000250|UniProtKB:P09339}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Aconitate hydratase 1 n=9 Tax=Staphylococcus epidermidis RepID=H3VCM6_STAEP
L3_128_043G1_scaffold_93_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18319..19959)
DNA (1641bp) protein (547aa)
Choline/carnitine/betaine transporter n=47 Tax=Staphylococcus epidermidis RepID=Q5HPJ1_STAEQ
Choline/carnitine/betaine transporter {ECO:0000313|EMBL:AAW54295.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
choline/carnitine/betaine transporter
L3_128_043G1_scaffold_93_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20126..20521
DNA (396bp) protein (132aa)
Large-conductance mechanosensitive channel n=13 Tax=Staphylococcaceae RepID=V4QSB8_STAEP
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Large-conductance mechanosensitive channel
L3_128_043G1_scaffold_93_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20639..23668)
DNA (3030bp) protein (1010aa)
Exonuclease SbcCD, C subunit n=1 Tax=Staphylococcus epidermidis NIHLM049 RepID=J0ZAQ7_STAEP
Nuclease SbcCD subunit C; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Exonuclease SbcC
L3_128_043G1_scaffold_93_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23672..24796)
DNA (1125bp) protein (375aa)
Nuclease SbcCD subunit D n=39 Tax=Staphylococcus epidermidis RepID=SBCD_STAEQ
exonuclease SbcD
Nuclease SbcCD subunit D; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_043G1_scaffold_93_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24904..25392)
DNA (489bp) protein (163aa)
Uncharacterized protein n=10 Tax=Staphylococcus epidermidis RepID=Q8CSP2_STAES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE59361.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_93_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25603..25830)
DNA (228bp) protein (76aa)
UPF0154 protein SE_1026 n=83 Tax=Staphylococcus epidermidis RepID=Y1026_STAES
hypothetical protein
UPF0154 protein HMPREF0794_0649 {ECO:0000256|HAMAP-Rule:MF_00363}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_93_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26037..28025)
DNA (1989bp) protein (663aa)
Transketolase (EC:2.2.1.1)
Transketolase; Short=TK;; EC=2.2.1.1;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Transketolase n=25 Tax=Staphylococcus epidermidis RepID=TKT_STAES
L3_128_043G1_scaffold_93_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28257..28493)
DNA (237bp) protein (79aa)
UPF0291 protein SE_1024 n=44 Tax=Staphylococcus epidermidis RepID=Y1024_STAES
hypothetical protein
UPF0291 protein HMPREF0794_0651 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_93_21

Not on your lists

comp(28654..28887)
DNA (234bp) protein (78aa)
Uncharacterized protein n=40 Tax=Staphylococcus epidermidis RepID=Q8CSP5_STAES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ19917.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_043G1_scaffold_93_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29031..29651
DNA (621bp) protein (207aa)
SOS-response repressor and protease LexA (EC:3.4.21.88)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
LexA repressor n=54 Tax=Staphylococcus epidermidis RepID=LEXA_STAEQ
L3_128_043G1_scaffold_93_23

Not on your lists

comp(29849..29950)
DNA (102bp) protein (34aa)
Uncharacterized protein n=9 Tax=Staphylococcus epidermidis RepID=Q5HPK3_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ19915.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_043G1_scaffold_93_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30005..30946)
DNA (942bp) protein (314aa)
Uncharacterized protein n=33 Tax=Staphylococcus epidermidis RepID=Q5HPK4_STAEQ
hypothetical protein
SCP-like protein {ECO:0000313|EMBL:EFE59368.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_93_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31044..32021)
DNA (978bp) protein (326aa)
GMP reductase (EC:1.7.1.7)
GMP reductase {ECO:0000256|HAMAP-Rule:MF_01511, ECO:0000256|SAAS:SAAS00082324}; EC=1.7.1.7 {ECO:0000256|HAMAP-Rule:MF_01511, ECO:0000256|SAAS:SAAS00043008};; Guanosine 5'-monophosphate oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01511}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
GMP reductase n=46 Tax=Staphylococcus epidermidis RepID=GUAC_STAEQ
L3_128_043G1_scaffold_93_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(32175..32444)
DNA (270bp) protein (90aa)
30S ribosomal protein S14 n=81 Tax=Staphylococcus epidermidis RepID=RS14_STAEQ
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000255|HAMAP-Rule:MF_00537}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L3_128_043G1_scaffold_93_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(32610..32759)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 2 n=89 Tax=Staphylococcus RepID=RL332_STAEQ
LSU ribosomal protein L33p
50S ribosomal protein L33 2; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L3_128_043G1_scaffold_93_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(32849..34363)
DNA (1515bp) protein (505aa)
Catalase; EC=1.11.1.6;; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Catalase (EC:1.11.1.6)
Catalase n=38 Tax=Staphylococcus RepID=CATA_STAEQ
L3_128_043G1_scaffold_93_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34594..36042
DNA (1449bp) protein (483aa)
Amino acid permease family protein n=31 Tax=Staphylococcus epidermidis RepID=Q5HPK9_STAEQ
amino acid permease
Amino acid permease family protein {ECO:0000313|EMBL:AAW54262.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_043G1_scaffold_93_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

36348..36662
DNA (315bp) protein (105aa)
Uncharacterized protein n=46 Tax=Staphylococcus epidermidis RepID=Q5HPL0_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW54261.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Displaying 30 items

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