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L3_128_043G1_scaffold_129

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_043G1_scaffold_129_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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164..319
DNA (156bp) protein (52aa)
IS1272-like transposase, degenerate n=27 Tax=Staphylococcus epidermidis RepID=Q5HN79_STAEQ
truncated IS1272 transposase
IS1272, transposase {ECO:0000313|EMBL:EFE60047.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_129_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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529..1659
DNA (1131bp) protein (377aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Epoxyqueuosine reductase n=48 Tax=Staphylococcus epidermidis RepID=Q8CRX0_STAES
Iron-sulfur cluster-binding protein
L3_128_043G1_scaffold_129_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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1656..2126
DNA (471bp) protein (157aa)
tRNA (cytosine34-2'-O-)-methyltransferase (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
RNA methyltransferase n=51 Tax=Staphylococcus epidermidis RepID=V6QAY7_STAEP
L3_128_043G1_scaffold_129_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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2284..2883
DNA (600bp) protein (200aa)
Glucosamine-6-phosphate isomerase family protein n=31 Tax=Staphylococcus epidermidis RepID=Q5HN82_STAEQ
glucosamine-6-phosphate isomerase family protein
Glucosamine-6-phosphate isomerase family protein {ECO:0000313|EMBL:EFE60050.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_129_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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2904..3086
DNA (183bp) protein (61aa)
Uncharacterized protein n=51 Tax=Staphylococcus epidermidis RepID=Q5HN83_STAEQ
Hypothetical protein SAV1853
Uncharacterized protein {ECO:0000313|EMBL:EFE60051.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_129_6
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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3242..3646
DNA (405bp) protein (135aa)
Uncharacterized protein n=38 Tax=Staphylococcus epidermidis RepID=Q5HN84_STAEQ
Hypothetical protein SAV1852
Uncharacterized protein {ECO:0000313|EMBL:ETJ14709.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_128_043G1_scaffold_129_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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3831..5216
DNA (1386bp) protein (462aa)
fumC; fumarate hydratase (EC:4.2.1.2)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Fumarate hydratase class II n=49 Tax=Staphylococcus epidermidis RepID=FUMC_STAEQ
L3_128_043G1_scaffold_129_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5577..6401)
DNA (825bp) protein (275aa)
Ribosomal large subunit pseudouridine synthase, RluD subfamily n=45 Tax=Staphylococcus epidermidis RepID=Q5HN86_STAEQ
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type
Ribosomal large subunit pseudouridine synthase, RluD subfamily {ECO:0000313|EMBL:AAW54714.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_043G1_scaffold_129_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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6560..7693
DNA (1134bp) protein (378aa)
Nitrate/nitrite sensor protein (EC:2.7.3.-)
Two-component sensor histidine kinase-like protein n=48 Tax=Staphylococcus epidermidis RepID=Q8CRX7_STAES
Histidine kinase {ECO:0000313|EMBL:EFE60055.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_129_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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7686..8309
DNA (624bp) protein (208aa)
DNA-binding response regulator, LuxR family n=77 Tax=Staphylococcus epidermidis RepID=Q5HN88_STAEQ
Two-component response regulator-like protein
LuxR family transcriptional regulator {ECO:0000313|EMBL:ESV18735.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
L3_128_043G1_scaffold_129_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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8580..9044
DNA (465bp) protein (155aa)
Transcriptional regulator, Cro/CI family n=79 Tax=Staphylococcus epidermidis RepID=Q5HN89_STAEQ
HTH domain protein SA1665, binds to mecA promoter region
Transcriptional regulator, Cro/CI family {ECO:0000313|EMBL:EES35839.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L3_128_043G1_scaffold_129_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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9223..10356
DNA (1134bp) protein (378aa)
Uncharacterized protein n=39 Tax=Staphylococcus epidermidis RepID=C5QA45_STAEP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE60058.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_129_13

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10429..10773
DNA (345bp) protein (115aa)
UPF0342 protein SERP1381 n=78 Tax=Staphylococcus epidermidis RepID=Y1381_STAEQ
putative transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:ETJ20097.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_043G1_scaffold_129_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11044..12240
DNA (1197bp) protein (399aa)
DNA repair exonuclease family protein n=45 Tax=Staphylococcus epidermidis RepID=Q5HN92_STAEQ
DNA repair exonuclease
DNA repair exonuclease family protein {ECO:0000313|EMBL:AAW54765.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_043G1_scaffold_129_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12230..15169
DNA (2940bp) protein (980aa)
Uncharacterized protein n=8 Tax=Staphylococcus epidermidis RepID=H3V269_STAEP
Uncharacterized protein {ECO:0000313|EMBL:EFE60061.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
DNA double-strand break repair rad50 ATPase
L3_128_043G1_scaffold_129_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15166..16107
DNA (942bp) protein (314aa)
Cmp-binding-factor 1 n=41 Tax=Staphylococcus epidermidis RepID=Q5HN94_STAEQ
CMP-binding-factor 1
HD domain protein {ECO:0000313|EMBL:EFE60062.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_129_17

Not on your lists

comp(16533..17510)
DNA (978bp) protein (326aa)
Foldase protein PrsA n=38 Tax=Staphylococcus epidermidis RepID=PRSA_STAEQ
protein export protein PrsA
Foldase protein prsA {ECO:0000313|EMBL:ETJ20093.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_043G1_scaffold_129_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17713..18273)
DNA (561bp) protein (187aa)
Uncharacterized protein n=54 Tax=Staphylococcus epidermidis RepID=Q5HN97_STAEQ
Hypothetical protein SAV1840
Uncharacterized protein {ECO:0000313|EMBL:AAW54760.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_043G1_scaffold_129_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18439..18810)
DNA (372bp) protein (124aa)
Uncharacterized protein n=43 Tax=Staphylococcus epidermidis RepID=Q5HN98_STAEQ
Hypothetical protein SAV1839
Uncharacterized protein {ECO:0000313|EMBL:EFE60065.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_129_20

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comp(18887..19312)
DNA (426bp) protein (142aa)
Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC:3.6.1.17)
HIT family protein n=52 Tax=Staphylococcus epidermidis RepID=Q5HN99_STAEQ
HIT histidine triad cell-cycle regulator {ECO:0000313|EMBL:ETJ20090.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_043G1_scaffold_129_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19442..20182
DNA (741bp) protein (247aa)
ABC transporter ecsA-like protein n=51 Tax=Staphylococcus epidermidis RepID=Q8CNR6_STAES
ABC transporter ecsA
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE60067.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_129_22

Not on your lists

20151..21398
DNA (1248bp) protein (416aa)
Bacterial ABC transporter protein EcsB n=16 Tax=Staphylococcus epidermidis RepID=F9LJK3_STAEP
ABC superfamily ATP binding cassette transporter, membrane protein {ECO:0000313|EMBL:ETJ20088.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
bacterial ABC transporter EcsB family protein
L3_128_043G1_scaffold_129_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21457..22080
DNA (624bp) protein (208aa)
Cadmium resistance transporter family protein n=2 Tax=Staphylococcus epidermidis RepID=F3SZL5_STAEP
Cadmium resistance protein
Cadmium resistance transporter family protein {ECO:0000313|EMBL:EFE60069.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_128_043G1_scaffold_129_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22637..23140)
DNA (504bp) protein (168aa)
Antibiotic biosynthesis monooxygenase n=14 Tax=Staphylococcus epidermidis RepID=F3TPP7_STAEP
Uncharacterized protein, homolog of B.subtilis yhgC
Signal transduction protein TRAP; Target of RNAIII-activating protein; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_128_043G1_scaffold_129_25

Not on your lists

23415..24494
DNA (1080bp) protein (360aa)
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=3 Tax=Staphylococcus epidermidis RepID=V6QAM8_STAEP
Uroporphyrinogen decarboxylase {ECO:0000313|EMBL:ETJ20085.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_043G1_scaffold_129_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24571..25494
DNA (924bp) protein (308aa)
hemH; ferrochelatase (EC:4.99.1.1)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Ferrochelatase n=44 Tax=Staphylococcus epidermidis RepID=HEMH_STAEQ
L3_128_043G1_scaffold_129_27

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25587..27035
DNA (1449bp) protein (483aa)
hemG; protoporphyrinogen oxidase (EC:1.3.3.4)
Protoporphyrinogen oxidase n=12 Tax=Staphylococcus epidermidis RepID=Q5HNA6_STAEQ
Protoporphyrinogen oxidase {ECO:0000313|EMBL:ETJ20083.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_128_043G1_scaffold_129_28

Not on your lists

27171..27725
DNA (555bp) protein (185aa)
Uncharacterized protein n=37 Tax=Staphylococcus epidermidis RepID=Q5HNA7_STAEQ
serine hydrolase family protein
Putative esterase {ECO:0000313|EMBL:ETJ20082.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Displaying 28 items

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